Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 20 studies | 25% ± 11% | |
oligodendrocyte precursor cell | 13 studies | 46% ± 16% | |
microglial cell | 12 studies | 34% ± 12% | |
oligodendrocyte | 12 studies | 37% ± 14% | |
astrocyte | 11 studies | 35% ± 19% | |
GABAergic neuron | 9 studies | 42% ± 23% | |
glutamatergic neuron | 9 studies | 48% ± 24% | |
macrophage | 9 studies | 29% ± 11% | |
adipocyte | 9 studies | 35% ± 12% | |
fibroblast | 9 studies | 28% ± 8% | |
interneuron | 6 studies | 45% ± 26% | |
mast cell | 6 studies | 29% ± 9% | |
neuron | 5 studies | 39% ± 18% | |
dendritic cell | 5 studies | 20% ± 3% | |
endothelial cell of lymphatic vessel | 5 studies | 27% ± 6% | |
pericyte | 5 studies | 25% ± 7% | |
smooth muscle cell | 5 studies | 21% ± 4% | |
type II pneumocyte | 5 studies | 21% ± 6% | |
B cell | 4 studies | 27% ± 8% | |
cardiac muscle cell | 4 studies | 20% ± 1% | |
epithelial cell | 4 studies | 24% ± 12% | |
T cell | 4 studies | 23% ± 4% | |
myeloid cell | 4 studies | 31% ± 7% | |
club cell | 4 studies | 22% ± 9% | |
GABAergic interneuron | 3 studies | 31% ± 1% | |
granule cell | 3 studies | 28% ± 10% | |
plasma cell | 3 studies | 29% ± 8% | |
vein endothelial cell | 3 studies | 30% ± 18% | |
hepatocyte | 3 studies | 59% ± 21% | |
alveolar macrophage | 3 studies | 29% ± 6% | |
monocyte | 3 studies | 30% ± 1% | |
respiratory goblet cell | 3 studies | 29% ± 12% | |
lymphocyte | 3 studies | 33% ± 5% | |
basal cell | 3 studies | 36% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 895.05 | 459 / 459 | 100% | 24.87 | 1118 / 1118 |
esophagus | 100% | 758.25 | 1445 / 1445 | 100% | 16.04 | 183 / 183 |
skin | 100% | 1220.68 | 1808 / 1809 | 100% | 43.09 | 472 / 472 |
prostate | 100% | 563.83 | 245 / 245 | 100% | 17.62 | 501 / 502 |
intestine | 100% | 580.03 | 964 / 966 | 100% | 18.31 | 526 / 527 |
bladder | 100% | 799.81 | 21 / 21 | 99% | 19.04 | 501 / 504 |
lung | 99% | 715.53 | 575 / 578 | 100% | 18.91 | 1154 / 1155 |
thymus | 100% | 682.33 | 653 / 653 | 99% | 16.08 | 601 / 605 |
brain | 99% | 612.04 | 2624 / 2642 | 100% | 34.03 | 705 / 705 |
ovary | 100% | 750.97 | 180 / 180 | 99% | 12.40 | 427 / 430 |
uterus | 100% | 767.67 | 170 / 170 | 99% | 18.36 | 455 / 459 |
kidney | 100% | 524.15 | 89 / 89 | 99% | 17.05 | 893 / 901 |
adrenal gland | 100% | 1205.50 | 258 / 258 | 99% | 22.48 | 227 / 230 |
stomach | 100% | 517.25 | 359 / 359 | 99% | 17.42 | 282 / 286 |
pancreas | 99% | 483.34 | 324 / 328 | 99% | 17.27 | 177 / 178 |
liver | 100% | 410.82 | 225 / 226 | 96% | 10.14 | 388 / 406 |
adipose | 100% | 918.74 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 20.76 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 22.28 | 29 / 29 |
spleen | 100% | 697.51 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.85 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.75 | 1 / 1 |
blood vessel | 100% | 767.83 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 566.63 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 94% | 525.32 | 813 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 80% | 552.27 | 744 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0006886 | Biological process | intracellular protein transport |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0003674 | Molecular function | molecular_function |
Gene name | SCFD2 |
Protein name | Sec1 family domain containing 2 Sec1 family domain-containing protein 2 (Syntaxin-binding protein 1-like 1) |
Synonyms | STXBP1L1 |
Description | FUNCTION: May be involved in protein transport. |
Accessions | ENST00000503450.1 Q8WU76 ENST00000401642.8 [Q8WU76-1] D6RCK6 ENST00000388940.8 [Q8WU76-2] |