SCARF1 | OmnibusX

Name	Number of supported studies	Average coverage
endothelial cell	16 studies	22% ± 9%	Explore
capillary endothelial cell	6 studies	20% ± 6%	Explore
endothelial cell of lymphatic vessel	6 studies	21% ± 4%	Explore
vein endothelial cell	5 studies	18% ± 4%	Explore
endothelial cell of vascular tree	4 studies	18% ± 2%	Explore
glomerular endothelial cell	3 studies	19% ± 2%	Explore

sc-RNAseq data

Insufficient scRNA-seq data for expression of SCARF1 at tissue level.

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	5069.94	653 / 653	99%	19.07	599 / 605
lung	100%	4051.27	578 / 578	97%	9.37	1122 / 1155
breast	100%	3187.00	459 / 459	96%	6.52	1075 / 1118
kidney	100%	1674.11	89 / 89	96%	16.41	866 / 901
adrenal gland	100%	1194.26	258 / 258	95%	8.77	219 / 230
liver	99%	1074.47	223 / 226	92%	5.31	374 / 406
bladder	100%	1474.62	21 / 21	90%	5.81	455 / 504
prostate	100%	1255.71	244 / 245	89%	4.31	449 / 502
intestine	98%	1181.84	949 / 966	90%	5.04	476 / 527
uterus	99%	1737.31	169 / 170	86%	4.58	397 / 459
stomach	92%	834.01	332 / 359	93%	5.86	266 / 286
brain	83%	660.48	2189 / 2642	100%	8.21	703 / 705
esophagus	91%	975.50	1309 / 1445	92%	5.19	168 / 183
pancreas	56%	335.12	183 / 328	98%	8.29	174 / 178
skin	64%	545.04	1158 / 1809	83%	5.01	394 / 472
ovary	66%	543.97	119 / 180	81%	3.67	349 / 430
adipose	100%	3584.25	1204 / 1204	0%	0	0 / 0
spleen	100%	6978.34	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	2.70	1 / 1
heart	100%	1436.83	858 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	97%	10.46	28 / 29
tonsil	0%	0	0 / 0	89%	4.82	40 / 45
muscle	88%	770.98	705 / 803	0%	0	0 / 0
blood vessel	79%	810.35	1050 / 1335	0%	0	0 / 0
peripheral blood	73%	1435.40	681 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	55%	2.65	44 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0016358	Biological process	dendrite development
GO_0016322	Biological process	neuron remodeling
GO_0007157	Biological process	heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO_0010976	Biological process	positive regulation of neuron projection development
GO_0006898	Biological process	receptor-mediated endocytosis
GO_0048680	Biological process	positive regulation of axon regeneration
GO_0006707	Biological process	cholesterol catabolic process
GO_0030666	Cellular component	endocytic vesicle membrane
GO_0005886	Cellular component	plasma membrane
GO_0016020	Cellular component	membrane
GO_0004888	Molecular function	transmembrane signaling receptor activity
GO_0030169	Molecular function	low-density lipoprotein particle binding
GO_0005515	Molecular function	protein binding
GO_0005044	Molecular function	scavenger receptor activity

Gene name	SCARF1
Protein name	Scavenger receptor class F member 1 Alternative protein SCARF1 Scavenger receptor class F member 1 (Acetyl LDL receptor) (Scavenger receptor expressed by endothelial cells 1) (SREC-I)
Synonyms	SREC KIAA0149
Description	FUNCTION: Mediates the binding and degradation of acetylated low density lipoprotein (Ac-LDL). Mediates heterophilic interactions, suggesting a function as adhesion protein. Plays a role in the regulation of neurite-like outgrowth (By similarity). .
Accessions	L8EAP7 I3L4R9 ENST00000571272.5 [Q14162-3] ENST00000573852.5 A0A0A0MR54 Q14162 ENST00000631462.1 [Q14162-5] ENST00000633740.1 ENST00000632317.1 [Q14162-3] ENST00000616905.1 ENST00000434376.6 [Q14162-5] ENST00000621348.4 [Q14162-1] ENST00000263071.9 [Q14162-1]

SCARF1 report