Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 9 studies | 27% ± 10% | |
classical monocyte | 8 studies | 24% ± 11% | |
conventional dendritic cell | 5 studies | 26% ± 12% | |
non-classical monocyte | 5 studies | 27% ± 8% | |
retinal rod cell | 5 studies | 28% ± 13% | |
retinal cone cell | 5 studies | 46% ± 27% | |
ciliated cell | 5 studies | 25% ± 6% | |
neuron | 4 studies | 30% ± 12% | |
retinal ganglion cell | 4 studies | 62% ± 27% | |
amacrine cell | 4 studies | 35% ± 13% | |
basal cell | 4 studies | 26% ± 10% | |
hematopoietic precursor cell | 3 studies | 21% ± 4% | |
endothelial cell | 3 studies | 21% ± 3% | |
retinal bipolar neuron | 3 studies | 52% ± 13% | |
OFF-bipolar cell | 3 studies | 39% ± 15% | |
ON-bipolar cell | 3 studies | 38% ± 16% | |
epithelial cell | 3 studies | 26% ± 2% | |
fibroblast | 3 studies | 16% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 4268.35 | 258 / 258 | 100% | 25.09 | 230 / 230 |
brain | 100% | 7976.64 | 2641 / 2642 | 100% | 17.19 | 705 / 705 |
esophagus | 99% | 3545.70 | 1436 / 1445 | 99% | 8.76 | 181 / 183 |
prostate | 98% | 2864.28 | 240 / 245 | 99% | 18.53 | 499 / 502 |
intestine | 99% | 2987.59 | 959 / 966 | 97% | 7.81 | 513 / 527 |
stomach | 99% | 2371.51 | 357 / 359 | 97% | 7.12 | 277 / 286 |
kidney | 99% | 2290.49 | 88 / 89 | 96% | 9.96 | 867 / 901 |
uterus | 91% | 1382.33 | 155 / 170 | 99% | 13.37 | 455 / 459 |
pancreas | 90% | 1104.97 | 295 / 328 | 99% | 12.03 | 176 / 178 |
lung | 90% | 1297.00 | 521 / 578 | 97% | 9.43 | 1121 / 1155 |
bladder | 86% | 1451.48 | 18 / 21 | 97% | 10.88 | 491 / 504 |
liver | 88% | 1163.57 | 200 / 226 | 94% | 8.00 | 381 / 406 |
ovary | 82% | 1118.84 | 148 / 180 | 99% | 9.70 | 426 / 430 |
thymus | 69% | 774.18 | 453 / 653 | 91% | 7.61 | 550 / 605 |
breast | 58% | 834.61 | 266 / 459 | 97% | 16.58 | 1090 / 1118 |
skin | 25% | 236.07 | 449 / 1809 | 84% | 4.99 | 395 / 472 |
spleen | 100% | 2391.89 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 11.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.58 | 1 / 1 |
heart | 96% | 3520.18 | 824 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 2321.85 | 838 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 90% | 6.74 | 26 / 29 |
muscle | 89% | 1420.94 | 712 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 80% | 961.36 | 1072 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 31% | 1.68 | 25 / 80 |
adipose | 30% | 295.49 | 356 / 1204 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042475 | Biological process | odontogenesis of dentin-containing tooth |
GO_0007420 | Biological process | brain development |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0022008 | Biological process | neurogenesis |
GO_0030097 | Biological process | hemopoiesis |
GO_0043204 | Cellular component | perikaryon |
GO_0030424 | Cellular component | axon |
GO_0043291 | Cellular component | RAVE complex |
GO_0008021 | Cellular component | synaptic vesicle |
GO_0098686 | Cellular component | hippocampal mossy fiber to CA3 synapse |
GO_0005635 | Cellular component | nuclear envelope |
GO_0030425 | Cellular component | dendrite |
GO_0005515 | Molecular function | protein binding |
Gene name | ROGDI |
Protein name | Protein rogdi homolog |
Synonyms | |
Description | |
Accessions | K7EID1 ENST00000588201.5 K7EPS3 ENST00000586504.5 K7ERN3 ENST00000591392.5 ENST00000592019.1 ENST00000587843.5 K7ERP1 ENST00000322048.12 ENST00000586153.1 Q9GZN7 K7EMJ5 K7EL91 ENST00000587711.5 K7EPN1 ENST00000587377.5 K7EJ96 |