RNF187 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	9 studies	23% ± 6%	Explore
fibroblast	8 studies	28% ± 12%	Explore
neuron	7 studies	33% ± 17%	Explore
gamma-delta T cell	7 studies	25% ± 7%	Explore
endothelial cell	7 studies	30% ± 11%	Explore
CD16-positive, CD56-dim natural killer cell, human	6 studies	21% ± 3%	Explore
epithelial cell	6 studies	34% ± 18%	Explore
CD16-negative, CD56-bright natural killer cell, human	5 studies	21% ± 4%	Explore
glutamatergic neuron	5 studies	25% ± 15%	Explore
basal cell	5 studies	31% ± 17%	Explore
ciliated cell	5 studies	29% ± 11%	Explore
B cell	5 studies	25% ± 11%	Explore
regulatory T cell	5 studies	19% ± 4%	Explore
CD8-positive, alpha-beta memory T cell	4 studies	22% ± 6%	Explore
CD4-positive, alpha-beta T cell	4 studies	17% ± 2%	Explore
retinal ganglion cell	4 studies	75% ± 23%	Explore
abnormal cell	4 studies	29% ± 9%	Explore
connective tissue cell	4 studies	33% ± 11%	Explore
myofibroblast cell	4 studies	20% ± 3%	Explore
amacrine cell	4 studies	44% ± 21%	Explore
erythrocyte	4 studies	24% ± 8%	Explore
hematopoietic precursor cell	3 studies	24% ± 6%	Explore
pancreatic A cell	3 studies	26% ± 5%	Explore
type B pancreatic cell	3 studies	39% ± 14%	Explore
CD8-positive, alpha-beta T cell	3 studies	21% ± 3%	Explore
classical monocyte	3 studies	29% ± 7%	Explore
conventional dendritic cell	3 studies	35% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell	3 studies	19% ± 0%	Explore
mature NK T cell	3 studies	20% ± 1%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	3 studies	17% ± 3%	Explore
non-classical monocyte	3 studies	39% ± 8%	Explore
retinal bipolar neuron	3 studies	32% ± 12%	Explore
smooth muscle cell	3 studies	25% ± 5%	Explore
pericyte	3 studies	31% ± 8%	Explore
retina horizontal cell	3 studies	37% ± 15%	Explore
retinal cone cell	3 studies	48% ± 7%	Explore
Mueller cell	3 studies	26% ± 7%	Explore
erythroblast	3 studies	43% ± 19%	Explore
CD4-positive, alpha-beta memory T cell	3 studies	16% ± 1%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	7 studies	24% ± 9%	Explore
peripheral blood	6 studies	21% ± 5%	Explore
eye	5 studies	26% ± 10%	Explore
brain	4 studies	22% ± 5%	Explore
pancreas	3 studies	30% ± 8%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
brain	100%	13021.28	2642 / 2642	100%	247.98	705 / 705
liver	100%	4473.00	226 / 226	100%	148.32	406 / 406
ovary	100%	6541.64	180 / 180	100%	133.00	430 / 430
kidney	100%	6107.20	89 / 89	100%	157.80	900 / 901
thymus	100%	7185.80	653 / 653	100%	227.59	604 / 605
uterus	100%	5656.55	170 / 170	100%	170.61	458 / 459
skin	100%	7759.32	1808 / 1809	100%	203.53	471 / 472
breast	100%	5004.26	459 / 459	100%	210.41	1115 / 1118
prostate	100%	6063.83	245 / 245	100%	188.42	500 / 502
esophagus	100%	5880.61	1444 / 1445	99%	120.04	182 / 183
adrenal gland	100%	11500.89	258 / 258	99%	186.09	228 / 230
intestine	100%	4248.30	966 / 966	99%	112.24	521 / 527
pancreas	99%	3578.80	326 / 328	99%	117.22	177 / 178
stomach	100%	3751.22	358 / 359	99%	96.39	283 / 286
lung	99%	4254.81	574 / 578	99%	144.64	1147 / 1155
bladder	100%	4905.14	21 / 21	99%	132.56	497 / 504
adipose	100%	4711.76	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	180.20	80 / 80
lymph node	0%	0	0 / 0	100%	126.07	29 / 29
spleen	100%	6157.81	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	161.39	45 / 45
ureter	0%	0	0 / 0	100%	153.92	1 / 1
muscle	100%	6286.98	801 / 803	0%	0	0 / 0
blood vessel	100%	4720.08	1331 / 1335	0%	0	0 / 0
peripheral blood	99%	4680.92	921 / 929	0%	0	0 / 0
heart	97%	4192.87	835 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0008284	Biological process	positive regulation of cell population proliferation
GO_0051865	Biological process	protein autoubiquitination
GO_0070936	Biological process	protein K48-linked ubiquitination
GO_0045893	Biological process	positive regulation of DNA-templated transcription
GO_0043161	Biological process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0004842	Molecular function	ubiquitin-protein transferase activity
GO_0005515	Molecular function	protein binding
GO_0046872	Molecular function	metal ion binding

IV. Literature review

[source]

Gene name	RNF187
Protein name	RNF187 protein E3 ubiquitin-protein ligase RNF187 E3 ubiquitin-protein ligase RNF187 (EC 2.3.2.27) (RING domain AP1 coactivator 1) (RACO-1) (RING finger protein 187) (RING-type E3 ubiquitin transferase RNF187)
Synonyms
Description	FUNCTION: E3 ubiquitin-protein ligase that acts as a coactivator of JUN-mediated gene activation in response to growth factor signaling via the MAP3K1 pathway, independently from MAPK8. .
Accessions	ENST00000305943 ENST00000305943.9 ENST00000643372.3 Q9BVY4 Q5TA31 A0A1X7SBW3

RNF187 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review