Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 33 studies | 43% ± 17% | |
macrophage | 19 studies | 30% ± 14% | |
fibroblast | 18 studies | 31% ± 10% | |
astrocyte | 17 studies | 46% ± 21% | |
oligodendrocyte precursor cell | 15 studies | 54% ± 22% | |
oligodendrocyte | 13 studies | 35% ± 15% | |
microglial cell | 13 studies | 43% ± 15% | |
myeloid cell | 10 studies | 32% ± 11% | |
capillary endothelial cell | 10 studies | 34% ± 16% | |
type I pneumocyte | 8 studies | 34% ± 11% | |
GABAergic neuron | 8 studies | 35% ± 14% | |
basal cell | 8 studies | 33% ± 18% | |
ciliated cell | 8 studies | 33% ± 8% | |
smooth muscle cell | 8 studies | 27% ± 11% | |
endothelial cell of lymphatic vessel | 8 studies | 35% ± 12% | |
endothelial cell of artery | 7 studies | 26% ± 9% | |
vein endothelial cell | 7 studies | 39% ± 23% | |
monocyte | 6 studies | 27% ± 6% | |
pericyte | 6 studies | 24% ± 5% | |
epithelial cell | 6 studies | 41% ± 20% | |
club cell | 6 studies | 25% ± 7% | |
adipocyte | 6 studies | 28% ± 7% | |
endothelial cell of vascular tree | 6 studies | 40% ± 21% | |
cardiac muscle cell | 5 studies | 41% ± 14% | |
Mueller cell | 5 studies | 44% ± 15% | |
interneuron | 5 studies | 36% ± 15% | |
classical monocyte | 4 studies | 22% ± 3% | |
mononuclear phagocyte | 4 studies | 30% ± 11% | |
connective tissue cell | 4 studies | 23% ± 4% | |
glomerular endothelial cell | 3 studies | 25% ± 8% | |
GABAergic interneuron | 3 studies | 21% ± 3% | |
dendritic cell | 3 studies | 27% ± 6% | |
endocardial cell | 3 studies | 34% ± 11% | |
glycinergic amacrine cell | 3 studies | 22% ± 4% | |
retinal cone cell | 3 studies | 24% ± 6% | |
mesothelial cell | 3 studies | 21% ± 2% | |
retinal pigment epithelial cell | 3 studies | 36% ± 25% | |
ependymal cell | 3 studies | 39% ± 15% | |
alveolar macrophage | 3 studies | 26% ± 7% | |
type II pneumocyte | 3 studies | 19% ± 2% | |
glutamatergic neuron | 3 studies | 28% ± 7% | |
mucus secreting cell | 3 studies | 28% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3995.76 | 459 / 459 | 99% | 43.19 | 1112 / 1118 |
esophagus | 100% | 2765.66 | 1445 / 1445 | 99% | 32.87 | 182 / 183 |
lung | 100% | 5459.63 | 578 / 578 | 99% | 31.65 | 1147 / 1155 |
ovary | 100% | 2339.96 | 180 / 180 | 99% | 25.14 | 425 / 430 |
uterus | 100% | 3996.84 | 170 / 170 | 98% | 33.86 | 452 / 459 |
pancreas | 99% | 1649.74 | 326 / 328 | 99% | 29.34 | 176 / 178 |
stomach | 100% | 1729.33 | 359 / 359 | 98% | 23.99 | 280 / 286 |
kidney | 100% | 2653.92 | 89 / 89 | 98% | 34.12 | 882 / 901 |
intestine | 100% | 2487.73 | 966 / 966 | 98% | 23.41 | 514 / 527 |
bladder | 100% | 2670.90 | 21 / 21 | 96% | 26.20 | 484 / 504 |
prostate | 100% | 3296.33 | 245 / 245 | 95% | 21.33 | 479 / 502 |
thymus | 100% | 3289.13 | 653 / 653 | 94% | 26.11 | 568 / 605 |
brain | 90% | 1594.42 | 2380 / 2642 | 100% | 41.72 | 704 / 705 |
skin | 100% | 4047.70 | 1809 / 1809 | 67% | 12.98 | 317 / 472 |
adrenal gland | 100% | 2055.40 | 258 / 258 | 50% | 5.64 | 114 / 230 |
adipose | 100% | 4162.23 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 2860.36 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 38.51 | 45 / 45 |
blood vessel | 100% | 2741.01 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 100% | 2192.34 | 860 / 861 | 0% | 0 | 0 / 0 |
muscle | 94% | 1055.08 | 754 / 803 | 0% | 0 | 0 / 0 |
liver | 60% | 444.24 | 136 / 226 | 24% | 2.86 | 96 / 406 |
lymph node | 0% | 0 | 0 / 0 | 48% | 5.21 | 14 / 29 |
eye | 0% | 0 | 0 / 0 | 31% | 2.54 | 25 / 80 |
peripheral blood | 18% | 139.67 | 166 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0010595 | Biological process | positive regulation of endothelial cell migration |
GO_2001214 | Biological process | positive regulation of vasculogenesis |
GO_1904906 | Biological process | positive regulation of endothelial cell-matrix adhesion via fibronectin |
GO_0006897 | Biological process | endocytosis |
GO_0007264 | Biological process | small GTPase-mediated signal transduction |
GO_0005575 | Cellular component | cellular_component |
GO_0005829 | Cellular component | cytosol |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0030695 | Molecular function | GTPase regulator activity |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005096 | Molecular function | GTPase activator activity |
Gene name | RIN2 |
Protein name | Ras and Rab interactor 2 (Ras association domain family 4) (Ras inhibitor JC265) (Ras interaction/interference protein 2) RIN2 protein Ras and Rab interactor 2 |
Synonyms | RASSF4 |
Description | FUNCTION: Ras effector protein. May function as an upstream activator and/or downstream effector for RAB5B in endocytic pathway. May function as a guanine nucleotide exchange (GEF) of RAB5B, required for activating the RAB5 proteins by exchanging bound GDP for free GTP. . |
Accessions | A1A4T0 Q8WYP3 ENST00000648440.1 [Q8WYP3-1] E7EPJ1 ENST00000440354.2 ENST00000255006.12 [Q8WYP3-1] |