Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 32 studies | 41% ± 17% | |
endothelial cell | 28 studies | 34% ± 14% | |
pericyte | 18 studies | 34% ± 12% | |
connective tissue cell | 15 studies | 47% ± 21% | |
myofibroblast cell | 13 studies | 34% ± 15% | |
smooth muscle cell | 13 studies | 26% ± 7% | |
endothelial cell of lymphatic vessel | 12 studies | 27% ± 10% | |
capillary endothelial cell | 12 studies | 26% ± 7% | |
epithelial cell | 11 studies | 41% ± 21% | |
vein endothelial cell | 11 studies | 29% ± 4% | |
endothelial cell of artery | 10 studies | 29% ± 6% | |
endothelial cell of vascular tree | 9 studies | 29% ± 8% | |
basal cell | 7 studies | 29% ± 15% | |
abnormal cell | 6 studies | 33% ± 15% | |
mesothelial cell | 6 studies | 37% ± 17% | |
progenitor cell | 5 studies | 34% ± 12% | |
ciliated cell | 5 studies | 35% ± 11% | |
Mueller cell | 5 studies | 51% ± 19% | |
oligodendrocyte precursor cell | 5 studies | 26% ± 7% | |
astrocyte | 4 studies | 32% ± 8% | |
adventitial cell | 4 studies | 24% ± 4% | |
enteroendocrine cell | 4 studies | 29% ± 10% | |
secretory cell | 4 studies | 23% ± 8% | |
pancreatic A cell | 3 studies | 43% ± 5% | |
type B pancreatic cell | 3 studies | 30% ± 3% | |
neural crest cell | 3 studies | 32% ± 5% | |
glial cell | 3 studies | 32% ± 20% | |
retinal ganglion cell | 3 studies | 49% ± 24% | |
extravillous trophoblast | 3 studies | 41% ± 14% | |
placental villous trophoblast | 3 studies | 56% ± 19% | |
type I pneumocyte | 3 studies | 27% ± 8% | |
myoepithelial cell | 3 studies | 33% ± 19% | |
goblet cell | 3 studies | 30% ± 11% | |
intestinal crypt stem cell | 3 studies | 24% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 100% | 6158.60 | 245 / 245 | 100% | 60.49 | 502 / 502 |
bladder | 100% | 6907.38 | 21 / 21 | 100% | 63.11 | 503 / 504 |
ovary | 100% | 6365.25 | 180 / 180 | 100% | 43.56 | 429 / 430 |
thymus | 100% | 4123.96 | 652 / 653 | 99% | 26.52 | 601 / 605 |
uterus | 100% | 5478.65 | 170 / 170 | 99% | 52.87 | 455 / 459 |
intestine | 100% | 3500.83 | 966 / 966 | 99% | 46.55 | 522 / 527 |
lung | 100% | 5489.02 | 577 / 578 | 99% | 35.82 | 1146 / 1155 |
esophagus | 99% | 2823.06 | 1436 / 1445 | 99% | 35.55 | 181 / 183 |
breast | 100% | 6149.09 | 459 / 459 | 97% | 38.39 | 1089 / 1118 |
stomach | 98% | 2571.57 | 352 / 359 | 97% | 44.43 | 278 / 286 |
kidney | 98% | 2981.88 | 87 / 89 | 97% | 37.98 | 875 / 901 |
brain | 94% | 2374.08 | 2496 / 2642 | 100% | 33.65 | 702 / 705 |
skin | 100% | 9117.24 | 1804 / 1809 | 93% | 33.02 | 439 / 472 |
liver | 100% | 3042.62 | 226 / 226 | 91% | 28.72 | 370 / 406 |
adrenal gland | 100% | 4754.47 | 258 / 258 | 87% | 20.60 | 200 / 230 |
pancreas | 67% | 972.30 | 219 / 328 | 99% | 41.47 | 177 / 178 |
adipose | 100% | 6994.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5746.26 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 2730.72 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 30.09 | 1 / 1 |
heart | 98% | 2633.73 | 844 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 16.87 | 28 / 29 |
eye | 0% | 0 | 0 / 0 | 96% | 24.24 | 77 / 80 |
tonsil | 0% | 0 | 0 / 0 | 93% | 26.37 | 42 / 45 |
muscle | 92% | 1676.42 | 740 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 19% | 830.22 | 179 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0043010 | Biological process | camera-type eye development |
GO_0001701 | Biological process | in utero embryonic development |
GO_0005788 | Cellular component | endoplasmic reticulum lumen |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RCN1 |
Protein name | Reticulocalbin-1 Reticulocalbin 1 |
Synonyms | RCN |
Description | FUNCTION: May regulate calcium-dependent activities in the endoplasmic reticulum lumen or post-ER compartment. |
Accessions | ENST00000527337.1 E9PLM2 Q15293 H0YER5 ENST00000532721.1 ENST00000054950.4 [Q15293-1] ENST00000528630.1 H0YDA4 |