Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 45 studies | 40% ± 19% | |
pericyte | 20 studies | 30% ± 9% | |
endothelial cell of lymphatic vessel | 18 studies | 32% ± 15% | |
oligodendrocyte | 16 studies | 66% ± 16% | |
capillary endothelial cell | 14 studies | 35% ± 16% | |
endothelial cell of artery | 14 studies | 35% ± 16% | |
smooth muscle cell | 12 studies | 28% ± 11% | |
vein endothelial cell | 11 studies | 38% ± 17% | |
glutamatergic neuron | 11 studies | 66% ± 27% | |
endothelial cell of vascular tree | 8 studies | 32% ± 16% | |
GABAergic neuron | 7 studies | 47% ± 20% | |
fibroblast | 6 studies | 34% ± 18% | |
type II pneumocyte | 5 studies | 54% ± 8% | |
cholangiocyte | 4 studies | 55% ± 26% | |
astrocyte | 4 studies | 34% ± 16% | |
neuron | 4 studies | 45% ± 11% | |
microglial cell | 4 studies | 34% ± 16% | |
club cell | 4 studies | 22% ± 5% | |
basal cell | 4 studies | 40% ± 26% | |
interneuron | 4 studies | 43% ± 18% | |
endothelial cell of sinusoid | 3 studies | 45% ± 11% | |
hepatic stellate cell | 3 studies | 44% ± 12% | |
glomerular endothelial cell | 3 studies | 26% ± 3% | |
myofibroblast cell | 3 studies | 18% ± 1% | |
GABAergic interneuron | 3 studies | 30% ± 8% | |
rod bipolar cell | 3 studies | 55% ± 23% | |
hepatocyte | 3 studies | 53% ± 25% | |
type I pneumocyte | 3 studies | 21% ± 7% | |
goblet cell | 3 studies | 42% ± 17% | |
granule cell | 3 studies | 45% ± 27% | |
mucus secreting cell | 3 studies | 38% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 8125.28 | 578 / 578 | 97% | 15.25 | 1126 / 1155 |
esophagus | 98% | 2166.42 | 1409 / 1445 | 99% | 16.50 | 182 / 183 |
breast | 100% | 3969.86 | 458 / 459 | 96% | 12.30 | 1076 / 1118 |
brain | 100% | 8402.24 | 2633 / 2642 | 94% | 20.51 | 664 / 705 |
thymus | 99% | 2399.67 | 646 / 653 | 95% | 13.03 | 572 / 605 |
pancreas | 100% | 2664.81 | 328 / 328 | 93% | 12.09 | 166 / 178 |
intestine | 93% | 1909.54 | 902 / 966 | 97% | 11.20 | 512 / 527 |
kidney | 96% | 2576.07 | 85 / 89 | 86% | 18.86 | 776 / 901 |
uterus | 93% | 1762.49 | 158 / 170 | 81% | 7.53 | 372 / 459 |
adrenal gland | 88% | 1599.82 | 227 / 258 | 83% | 11.91 | 192 / 230 |
liver | 92% | 1731.84 | 209 / 226 | 75% | 7.93 | 306 / 406 |
bladder | 95% | 1331.05 | 20 / 21 | 66% | 6.33 | 334 / 504 |
stomach | 61% | 706.78 | 218 / 359 | 98% | 11.28 | 279 / 286 |
prostate | 80% | 1150.62 | 197 / 245 | 74% | 4.21 | 371 / 502 |
ovary | 54% | 855.65 | 97 / 180 | 85% | 6.69 | 364 / 430 |
skin | 72% | 1670.59 | 1298 / 1809 | 54% | 4.61 | 256 / 472 |
spleen | 100% | 7884.27 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 4207.69 | 1201 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 12.38 | 44 / 45 |
blood vessel | 96% | 2497.00 | 1286 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 1700.22 | 796 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 59% | 6.72 | 17 / 29 |
muscle | 32% | 339.81 | 260 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 15% | 0.82 | 12 / 80 |
peripheral blood | 11% | 143.79 | 98 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007265 | Biological process | Ras protein signal transduction |
GO_0007399 | Biological process | nervous system development |
GO_0007264 | Biological process | small GTPase-mediated signal transduction |
GO_0016604 | Cellular component | nuclear body |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005886 | Cellular component | plasma membrane |
GO_0005634 | Cellular component | nucleus |
GO_0005085 | Molecular function | guanyl-nucleotide exchange factor activity |
GO_0030742 | Molecular function | GTP-dependent protein binding |
Gene name | RAPGEF5 |
Protein name | Rap guanine nucleotide exchange factor 5 (Guanine nucleotide exchange factor for Rap1) (M-Ras-regulated Rap GEF) (MR-GEF) (Related to Epac) (Repac) HCG38228, isoform CRA_b (Rap guanine nucleotide exchange factor 5 isoform 2) Rap guanine nucleotide exchange factor 5 isoform 1 Rap guanine nucleotide exchange factor 5 |
Synonyms | hCG_38228 MRGEF GFR KIAA0277 |
Description | FUNCTION: Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation. . |
Accessions | A8MQ07 F8WD32 A0A590UJR0 ENST00000665637.1 ENST00000401957.6 [Q92565-1] E9PGY3 A0A0S2Z5S1 ENST00000420196.5 A0A0S2Z561 C9JHM4 ENST00000451559.1 ENST00000344041.10 ENST00000405243.1 ENST00000458533.5 Q92565 C9JBS6 |