Name | Number of supported studies | Average coverage | |
---|---|---|---|
epithelial cell | 17 studies | 39% ± 17% | |
basal cell | 10 studies | 42% ± 21% | |
ciliated cell | 9 studies | 35% ± 18% | |
type I pneumocyte | 8 studies | 32% ± 11% | |
secretory cell | 8 studies | 32% ± 19% | |
goblet cell | 8 studies | 25% ± 6% | |
club cell | 7 studies | 38% ± 15% | |
respiratory goblet cell | 6 studies | 35% ± 20% | |
progenitor cell | 6 studies | 35% ± 11% | |
intestinal crypt stem cell | 5 studies | 33% ± 11% | |
transit amplifying cell | 5 studies | 22% ± 8% | |
type II pneumocyte | 5 studies | 39% ± 17% | |
enterocyte | 4 studies | 32% ± 6% | |
brush cell | 4 studies | 27% ± 14% | |
duct epithelial cell | 3 studies | 26% ± 14% | |
ionocyte | 3 studies | 29% ± 8% | |
squamous epithelial cell | 3 studies | 42% ± 21% | |
pancreatic A cell | 3 studies | 31% ± 7% | |
enteroendocrine cell | 3 studies | 27% ± 5% | |
neuroendocrine cell | 3 studies | 30% ± 6% | |
serous secreting cell | 3 studies | 24% ± 9% | |
pancreatic ductal cell | 3 studies | 41% ± 18% | |
luminal hormone-sensing cell of mammary gland | 3 studies | 23% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 99% | 2358.23 | 645 / 653 | 95% | 191.65 | 576 / 605 |
pancreas | 97% | 1681.54 | 317 / 328 | 95% | 246.21 | 169 / 178 |
prostate | 84% | 1980.71 | 206 / 245 | 98% | 188.45 | 494 / 502 |
lung | 84% | 1722.15 | 488 / 578 | 98% | 228.12 | 1128 / 1155 |
stomach | 74% | 2669.74 | 266 / 359 | 97% | 248.41 | 278 / 286 |
breast | 51% | 1001.14 | 233 / 459 | 98% | 262.10 | 1099 / 1118 |
intestine | 43% | 1913.48 | 413 / 966 | 99% | 313.75 | 522 / 527 |
bladder | 43% | 1297.95 | 9 / 21 | 95% | 308.18 | 481 / 504 |
esophagus | 39% | 6923.04 | 558 / 1445 | 98% | 225.79 | 179 / 183 |
kidney | 89% | 1347.96 | 79 / 89 | 15% | 12.83 | 131 / 901 |
tonsil | 0% | 0 | 0 / 0 | 100% | 237.82 | 45 / 45 |
uterus | 5% | 169.34 | 8 / 170 | 86% | 261.12 | 396 / 459 |
skin | 72% | 6838.21 | 1304 / 1809 | 6% | 9.61 | 30 / 472 |
ovary | 0% | 0 | 0 / 180 | 75% | 138.81 | 321 / 430 |
lymph node | 0% | 0 | 0 / 0 | 21% | 28.35 | 6 / 29 |
liver | 0% | 0 | 0 / 226 | 12% | 31.53 | 50 / 406 |
adrenal gland | 0% | 0 | 0 / 258 | 0% | 0.38 | 1 / 230 |
adipose | 0% | 11.13 | 5 / 1204 | 0% | 0 | 0 / 0 |
muscle | 0% | 2.90 | 2 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 5.09 | 1 / 929 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 4.31 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
brain | 0% | 0 | 0 / 2642 | 0% | 0 | 0 / 705 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0031268 | Biological process | pseudopodium organization |
GO_0008284 | Biological process | positive regulation of cell population proliferation |
GO_0015031 | Biological process | protein transport |
GO_0060627 | Biological process | regulation of vesicle-mediated transport |
GO_0003382 | Biological process | epithelial cell morphogenesis |
GO_0006887 | Biological process | exocytosis |
GO_0010634 | Biological process | positive regulation of epithelial cell migration |
GO_0031143 | Cellular component | pseudopodium |
GO_0031260 | Cellular component | pseudopodium membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0055037 | Cellular component | recycling endosome |
GO_0031489 | Molecular function | myosin V binding |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | RAB25 |
Protein name | Ras-related protein Rab-25 (CATX-8) |
Synonyms | CATX8 |
Description | FUNCTION: Involved in the regulation of cell survival. Promotes invasive migration of cells in which it functions to localize and maintain integrin alpha-V/beta-1 at the tips of extending pseudopodia . Involved in the regulation of epithelial morphogenesis through the control of CLDN4 expression and localization at tight junctions (By similarity). May selectively regulate the apical recycling pathway. Together with MYO5B regulates transcytosis (By similarity). . |
Accessions | ENST00000361084.10 P57735 |