Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 7 studies | 30% ± 9% | |
GABAergic neuron | 7 studies | 34% ± 19% | |
astrocyte | 7 studies | 31% ± 12% | |
oligodendrocyte | 7 studies | 26% ± 8% | |
neuron | 6 studies | 32% ± 19% | |
interneuron | 6 studies | 32% ± 21% | |
oligodendrocyte precursor cell | 6 studies | 31% ± 13% | |
epithelial cell | 6 studies | 36% ± 8% | |
glutamatergic neuron | 5 studies | 47% ± 24% | |
fibroblast | 4 studies | 20% ± 3% | |
adipocyte | 4 studies | 19% ± 3% | |
type I pneumocyte | 4 studies | 19% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
granule cell | 3 studies | 17% ± 3% | |
microglial cell | 3 studies | 26% ± 1% | |
B cell | 3 studies | 19% ± 1% | |
ciliated cell | 3 studies | 25% ± 6% | |
lymphocyte | 3 studies | 20% ± 2% | |
abnormal cell | 3 studies | 30% ± 15% | |
intestinal crypt stem cell | 3 studies | 20% ± 5% | |
endothelial cell of lymphatic vessel | 3 studies | 16% ± 1% | |
macrophage | 3 studies | 22% ± 4% | |
transit amplifying cell | 3 studies | 33% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 4213.38 | 21 / 21 | 100% | 24.79 | 504 / 504 |
breast | 100% | 3854.08 | 459 / 459 | 100% | 21.48 | 1118 / 1118 |
esophagus | 100% | 3854.06 | 1445 / 1445 | 100% | 23.03 | 183 / 183 |
intestine | 100% | 4592.45 | 966 / 966 | 100% | 28.04 | 527 / 527 |
lung | 100% | 3844.30 | 578 / 578 | 100% | 21.37 | 1155 / 1155 |
ovary | 100% | 5608.32 | 180 / 180 | 100% | 19.98 | 430 / 430 |
stomach | 100% | 3503.75 | 359 / 359 | 100% | 25.56 | 286 / 286 |
brain | 100% | 4037.50 | 2641 / 2642 | 100% | 33.45 | 705 / 705 |
prostate | 100% | 4345.03 | 245 / 245 | 100% | 17.27 | 501 / 502 |
uterus | 100% | 4952.78 | 170 / 170 | 100% | 21.64 | 458 / 459 |
liver | 100% | 3313.48 | 226 / 226 | 99% | 14.11 | 403 / 406 |
kidney | 100% | 3851.03 | 89 / 89 | 99% | 17.13 | 894 / 901 |
thymus | 100% | 4978.64 | 653 / 653 | 99% | 16.88 | 600 / 605 |
skin | 100% | 3912.85 | 1809 / 1809 | 99% | 23.48 | 466 / 472 |
pancreas | 100% | 2391.26 | 327 / 328 | 99% | 14.60 | 176 / 178 |
adrenal gland | 100% | 5614.08 | 258 / 258 | 98% | 17.77 | 226 / 230 |
adipose | 100% | 3619.04 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 21.53 | 29 / 29 |
muscle | 100% | 5990.24 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4914.66 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 17.49 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 8.08 | 1 / 1 |
blood vessel | 100% | 3438.39 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 4955.22 | 849 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 25.99 | 76 / 80 |
peripheral blood | 63% | 2213.39 | 588 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0032543 | Biological process | mitochondrial translation |
GO_0006417 | Biological process | regulation of translation |
GO_0005739 | Cellular component | mitochondrion |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0005763 | Cellular component | mitochondrial small ribosomal subunit |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0019843 | Molecular function | rRNA binding |
GO_0043024 | Molecular function | ribosomal small subunit binding |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | PTCD3 |
Protein name | Pentatricopeptide repeat domain 3 Small ribosomal subunit protein mS39 (28S ribosomal protein S39, mitochondrial) (MRP-S39) (Pentatricopeptide repeat domain-containing protein 3, mitochondrial) (Transformation-related gene 15 protein) (TRG-15) |
Synonyms | TRG15 MRPS39 |
Description | FUNCTION: Mitochondrial RNA-binding protein that has a role in mitochondrial translation. . |
Accessions | ENST00000409326.6 Q96EY7 F8WE76 ENST00000627371.1 B8ZZQ4 F8WBP9 ENST00000409783.6 ENST00000254630.12 [Q96EY7-1] ENST00000418628.5 |