Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 28% ± 10% | |
ciliated cell | 14 studies | 29% ± 9% | |
basal cell | 11 studies | 31% ± 19% | |
type I pneumocyte | 9 studies | 40% ± 11% | |
oligodendrocyte precursor cell | 9 studies | 29% ± 14% | |
oligodendrocyte | 8 studies | 27% ± 8% | |
GABAergic neuron | 7 studies | 36% ± 19% | |
astrocyte | 7 studies | 31% ± 12% | |
interneuron | 6 studies | 34% ± 21% | |
macrophage | 6 studies | 28% ± 9% | |
type II pneumocyte | 6 studies | 26% ± 6% | |
microglial cell | 5 studies | 22% ± 5% | |
epithelial cell | 5 studies | 46% ± 23% | |
endothelial cell of lymphatic vessel | 5 studies | 27% ± 6% | |
fibroblast | 5 studies | 21% ± 4% | |
squamous epithelial cell | 4 studies | 44% ± 18% | |
neuron | 4 studies | 30% ± 10% | |
respiratory goblet cell | 4 studies | 26% ± 8% | |
glutamatergic neuron | 4 studies | 54% ± 13% | |
club cell | 4 studies | 34% ± 6% | |
smooth muscle cell | 4 studies | 19% ± 2% | |
secretory cell | 3 studies | 22% ± 6% | |
hematopoietic precursor cell | 3 studies | 17% ± 1% | |
myeloid cell | 3 studies | 19% ± 3% | |
dendritic cell | 3 studies | 20% ± 6% | |
mesothelial cell | 3 studies | 22% ± 1% | |
abnormal cell | 3 studies | 23% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8030.67 | 1445 / 1445 | 100% | 62.09 | 183 / 183 |
lung | 100% | 6489.83 | 578 / 578 | 100% | 53.59 | 1155 / 1155 |
breast | 100% | 4421.33 | 459 / 459 | 100% | 37.16 | 1116 / 1118 |
uterus | 100% | 4828.26 | 170 / 170 | 100% | 61.76 | 458 / 459 |
brain | 100% | 2527.52 | 2630 / 2642 | 100% | 32.84 | 705 / 705 |
bladder | 100% | 4498.14 | 21 / 21 | 99% | 46.63 | 501 / 504 |
prostate | 100% | 4004.66 | 245 / 245 | 99% | 25.69 | 499 / 502 |
thymus | 100% | 4401.91 | 653 / 653 | 99% | 34.42 | 600 / 605 |
pancreas | 100% | 2466.94 | 327 / 328 | 99% | 42.29 | 177 / 178 |
intestine | 100% | 4749.50 | 966 / 966 | 99% | 25.65 | 522 / 527 |
stomach | 100% | 3574.28 | 359 / 359 | 98% | 25.56 | 281 / 286 |
kidney | 100% | 3516.64 | 89 / 89 | 98% | 25.64 | 885 / 901 |
skin | 100% | 6094.84 | 1809 / 1809 | 97% | 26.81 | 459 / 472 |
ovary | 100% | 3880.41 | 180 / 180 | 97% | 20.93 | 418 / 430 |
adrenal gland | 100% | 3416.40 | 258 / 258 | 86% | 12.66 | 197 / 230 |
liver | 91% | 1385.97 | 206 / 226 | 87% | 14.80 | 354 / 406 |
adipose | 100% | 4480.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
spleen | 100% | 4208.32 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 72.78 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 18.30 | 1 / 1 |
blood vessel | 100% | 4971.63 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 98% | 1933.11 | 787 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 2625.01 | 834 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 18.78 | 28 / 29 |
peripheral blood | 96% | 4683.97 | 892 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 76% | 11.52 | 61 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007165 | Biological process | signal transduction |
GO_0006468 | Biological process | protein phosphorylation |
GO_0006470 | Biological process | protein dephosphorylation |
GO_0005737 | Cellular component | cytoplasm |
GO_0030289 | Cellular component | protein phosphatase 4 complex |
GO_0019888 | Molecular function | protein phosphatase regulator activity |
GO_0004721 | Molecular function | phosphoprotein phosphatase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | PPP4R1 |
Protein name | Protein phosphatase 4 regulatory subunit 1 Serine/threonine-protein phosphatase 4 regulatory subunit 1 |
Synonyms | MEG1 PP4R1 |
Description | FUNCTION: Regulatory subunit of serine/threonine-protein phosphatase 4. May play a role in regulation of cell division in renal glomeruli. The PPP4C-PPP4R1 PP4 complex may play a role in dephosphorylation and regulation of HDAC3. . |
Accessions | J3KSS1 F8WAJ9 J3QQV0 ENST00000581835.1 ENST00000400556.8 [Q8TF05-1] ENST00000580745.5 ENST00000581250.5 ENST00000580182.5 J3KRU1 J3KSH2 ENST00000578875.5 J3QRV2 J3KSB0 ENST00000400555.7 [Q8TF05-2] ENST00000583092.1 ENST00000285124.12 J3QL26 ENST00000582240.5 Q8TF05 ENST00000584074.5 J3QLA6 |