Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 23% ± 8% | |
microglial cell | 9 studies | 27% ± 10% | |
oligodendrocyte precursor cell | 8 studies | 36% ± 16% | |
glutamatergic neuron | 7 studies | 43% ± 25% | |
GABAergic neuron | 7 studies | 41% ± 21% | |
astrocyte | 7 studies | 36% ± 14% | |
neuron | 6 studies | 29% ± 16% | |
oligodendrocyte | 6 studies | 29% ± 8% | |
macrophage | 5 studies | 27% ± 13% | |
interneuron | 5 studies | 42% ± 24% | |
epithelial cell | 4 studies | 24% ± 6% | |
adipocyte | 4 studies | 20% ± 4% | |
GABAergic interneuron | 3 studies | 20% ± 3% | |
abnormal cell | 3 studies | 28% ± 14% | |
endothelial cell of lymphatic vessel | 3 studies | 18% ± 1% | |
fibroblast | 3 studies | 17% ± 2% | |
transit amplifying cell | 3 studies | 31% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
uterus | 100% | 1553.40 | 170 / 170 | 100% | 12.15 | 459 / 459 |
esophagus | 100% | 967.25 | 1444 / 1445 | 100% | 10.80 | 183 / 183 |
breast | 100% | 1290.66 | 459 / 459 | 100% | 11.57 | 1117 / 1118 |
prostate | 100% | 1320.64 | 245 / 245 | 100% | 9.56 | 501 / 502 |
ovary | 100% | 1512.15 | 180 / 180 | 100% | 11.07 | 429 / 430 |
bladder | 100% | 1174.57 | 21 / 21 | 100% | 9.54 | 502 / 504 |
brain | 100% | 939.66 | 2629 / 2642 | 100% | 13.64 | 705 / 705 |
thymus | 100% | 1400.28 | 653 / 653 | 99% | 9.10 | 601 / 605 |
lung | 99% | 996.71 | 574 / 578 | 100% | 9.77 | 1155 / 1155 |
stomach | 100% | 866.68 | 359 / 359 | 99% | 9.55 | 282 / 286 |
pancreas | 99% | 779.60 | 326 / 328 | 99% | 7.77 | 176 / 178 |
intestine | 100% | 1184.40 | 966 / 966 | 98% | 9.23 | 515 / 527 |
adrenal gland | 100% | 1068.78 | 258 / 258 | 96% | 6.87 | 221 / 230 |
kidney | 100% | 801.57 | 89 / 89 | 94% | 7.08 | 846 / 901 |
skin | 100% | 1195.80 | 1804 / 1809 | 92% | 9.57 | 436 / 472 |
liver | 100% | 719.46 | 226 / 226 | 92% | 4.60 | 373 / 406 |
adipose | 100% | 1260.00 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 9.95 | 29 / 29 |
spleen | 100% | 1669.66 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 9.26 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 6.40 | 1 / 1 |
blood vessel | 100% | 915.10 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 693.46 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 592.53 | 839 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 65% | 4.01 | 52 / 80 |
peripheral blood | 41% | 595.59 | 377 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0009410 | Biological process | response to xenobiotic stimulus |
GO_0006298 | Biological process | mismatch repair |
GO_0032389 | Cellular component | MutLalpha complex |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0019899 | Molecular function | enzyme binding |
GO_0005515 | Molecular function | protein binding |
GO_0030983 | Molecular function | mismatched DNA binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
GO_0005524 | Molecular function | ATP binding |
GO_0140664 | Molecular function | ATP-dependent DNA damage sensor activity |
Gene name | PMS1 |
Protein name | PMS1 homolog 1, mismatch repair system component PMS1 nirs variant 9 PMS1 homolog 1, mismatch repair system component (cDNA, FLJ79114, highly similar to PMS1 protein homolog 1) PMS1 protein PMS1 homolog 1, mismatch repair system component (PMS1 nirs variant 1) PMS1 homolog 1, mismatch repair system component (PMS1 nirs variant 6) PMS1 nirs variant 5 PMS1 homolog 1, mismatch repair system component (PMS1 protein) PMS1 protein homolog 1 (DNA mismatch repair protein PMS1) PMS1 homolog 1, mismatch repair system component (Rhabdomyosarcoma antigen MU-RMS-40.10E) Rhabdomyosarcoma antigen MU-RMS-40.10B PMS1 homolog 1, mismatch repair system component (PMS1 nirs variant 3) PMS1 nirs variant 8 |
Synonyms | PMSL1 |
Description | FUNCTION: Probably involved in the repair of mismatches in DNA. . |
Accessions | ENST00000424307.5 E9PH88 ENST00000447734.5 B7ZAA0 Q5FBZ4 ENST00000624204.3 ENST00000418224.7 C9JF76 F8W8L1 Q5FBZ2 ENST00000441310.7 [P54277-1] ENST00000432292.7 ENST00000452382.1 Q5FBZ5 ENST00000618056.4 ENST00000409593.5 [P54277-4] ENST00000342075.8 Q5FBZ9 E9PC40 Q5FBZ7 C9J4L1 ENST00000409985.5 E9PC65 P54277 C9JKP0 ENST00000450931.5 Q3BDU4 Q5XG96 ENST00000374826.8 ENST00000446877.5 ENST00000420421.1 Q5FBZ1 Q3BDU3 ENST00000424766.5 I6L9H5 ENST00000447232.6 [P54277-2] ENST00000409823.7 [P54277-3] |