Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 38 studies | 29% ± 9% | |
pericyte | 32 studies | 31% ± 13% | |
fibroblast | 29 studies | 29% ± 10% | |
smooth muscle cell | 25 studies | 41% ± 13% | |
capillary endothelial cell | 15 studies | 28% ± 7% | |
endothelial cell of vascular tree | 15 studies | 30% ± 16% | |
endothelial cell of lymphatic vessel | 14 studies | 25% ± 5% | |
endothelial cell of artery | 13 studies | 34% ± 15% | |
type I pneumocyte | 12 studies | 50% ± 11% | |
myofibroblast cell | 12 studies | 48% ± 15% | |
vein endothelial cell | 12 studies | 24% ± 14% | |
basal cell | 11 studies | 31% ± 12% | |
oligodendrocyte | 9 studies | 26% ± 8% | |
type II pneumocyte | 8 studies | 27% ± 7% | |
connective tissue cell | 8 studies | 35% ± 18% | |
epithelial cell | 7 studies | 36% ± 15% | |
ciliated cell | 5 studies | 23% ± 7% | |
squamous epithelial cell | 4 studies | 42% ± 19% | |
podocyte | 4 studies | 34% ± 15% | |
club cell | 4 studies | 24% ± 5% | |
mesothelial cell | 4 studies | 27% ± 8% | |
cardiac muscle cell | 4 studies | 21% ± 2% | |
secretory cell | 4 studies | 23% ± 8% | |
myoepithelial cell | 4 studies | 31% ± 6% | |
hepatocyte | 4 studies | 43% ± 26% | |
GABAergic neuron | 4 studies | 37% ± 13% | |
keratinocyte | 4 studies | 22% ± 2% | |
interneuron | 4 studies | 32% ± 18% | |
glomerular endothelial cell | 3 studies | 31% ± 3% | |
progenitor cell | 3 studies | 28% ± 3% | |
muscle cell | 3 studies | 47% ± 16% | |
astrocyte | 3 studies | 26% ± 7% | |
renal principal cell | 3 studies | 37% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 19459.36 | 577 / 578 | 99% | 282.34 | 1139 / 1155 |
esophagus | 100% | 10799.14 | 1442 / 1445 | 98% | 223.85 | 179 / 183 |
thymus | 100% | 16729.96 | 652 / 653 | 96% | 390.69 | 581 / 605 |
uterus | 100% | 16400.47 | 170 / 170 | 95% | 213.93 | 434 / 459 |
liver | 99% | 8705.98 | 224 / 226 | 95% | 139.83 | 387 / 406 |
skin | 100% | 16297.50 | 1808 / 1809 | 94% | 222.94 | 445 / 472 |
bladder | 100% | 8281.90 | 21 / 21 | 91% | 158.78 | 458 / 504 |
breast | 100% | 11347.99 | 458 / 459 | 87% | 110.65 | 973 / 1118 |
kidney | 99% | 6846.09 | 88 / 89 | 84% | 105.80 | 756 / 901 |
stomach | 78% | 4294.89 | 280 / 359 | 91% | 91.90 | 260 / 286 |
intestine | 78% | 5169.24 | 752 / 966 | 90% | 93.52 | 473 / 527 |
ovary | 100% | 10207.97 | 180 / 180 | 43% | 27.76 | 184 / 430 |
prostate | 89% | 4978.47 | 217 / 245 | 53% | 32.27 | 264 / 502 |
brain | 57% | 2379.15 | 1503 / 2642 | 78% | 74.51 | 547 / 705 |
adrenal gland | 84% | 4245.32 | 216 / 258 | 46% | 42.65 | 105 / 230 |
pancreas | 27% | 948.67 | 88 / 328 | 97% | 142.91 | 173 / 178 |
blood vessel | 100% | 52338.01 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 56.32 | 1 / 1 |
adipose | 100% | 16221.52 | 1203 / 1204 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 206.90 | 44 / 45 |
spleen | 97% | 7255.97 | 234 / 241 | 0% | 0 | 0 / 0 |
heart | 84% | 4270.37 | 719 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 80.68 | 66 / 80 |
muscle | 32% | 1266.42 | 258 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 3.73 | 1 / 29 |
peripheral blood | 2% | 67.53 | 15 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051017 | Biological process | actin filament bundle assembly |
GO_0060348 | Biological process | bone development |
GO_0051639 | Biological process | actin filament network formation |
GO_0005829 | Cellular component | cytosol |
GO_0005886 | Cellular component | plasma membrane |
GO_0032432 | Cellular component | actin filament bundle |
GO_0005884 | Cellular component | actin filament |
GO_0005737 | Cellular component | cytoplasm |
GO_0005509 | Molecular function | calcium ion binding |
GO_0051015 | Molecular function | actin filament binding |
Gene name | PLS3 |
Protein name | PLS3 protein Plastin 3 Plastin-3 (T-plastin) |
Synonyms | |
Description | FUNCTION: Actin-bundling protein found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodia. May play a role in the regulation of bone development. |
Accessions | ENST00000626746.2 ENST00000489283.5 ENST00000539310.5 [P13797-1] P13797 ENST00000289290.7 [P13797-2] ENST00000355899.8 [P13797-1] ENST00000497870.1 U3KQI3 H7C4N2 A7E2S2 ENST00000473026.6 F2Z2Z9 ENST00000481823.5 |