Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 21 studies | 42% ± 19% | |
pericyte | 16 studies | 46% ± 24% | |
oligodendrocyte precursor cell | 15 studies | 75% ± 17% | |
glutamatergic neuron | 12 studies | 50% ± 20% | |
astrocyte | 11 studies | 35% ± 18% | |
oligodendrocyte | 10 studies | 35% ± 14% | |
GABAergic neuron | 9 studies | 44% ± 16% | |
fibroblast | 9 studies | 34% ± 14% | |
adipocyte | 8 studies | 60% ± 10% | |
interneuron | 7 studies | 33% ± 20% | |
type I pneumocyte | 7 studies | 48% ± 19% | |
retinal cone cell | 6 studies | 60% ± 26% | |
cardiac muscle cell | 6 studies | 66% ± 21% | |
mesothelial cell | 6 studies | 40% ± 16% | |
type II pneumocyte | 6 studies | 44% ± 16% | |
neuron | 5 studies | 35% ± 11% | |
epithelial cell | 5 studies | 39% ± 27% | |
smooth muscle cell | 5 studies | 42% ± 21% | |
microglial cell | 4 studies | 44% ± 18% | |
retina horizontal cell | 4 studies | 34% ± 10% | |
retinal rod cell | 4 studies | 67% ± 10% | |
club cell | 4 studies | 18% ± 2% | |
GABAergic interneuron | 3 studies | 39% ± 13% | |
glial cell | 3 studies | 33% ± 3% | |
granule cell | 3 studies | 37% ± 15% | |
macrophage | 3 studies | 29% ± 11% | |
endothelial cell of artery | 3 studies | 26% ± 8% | |
GABAergic amacrine cell | 3 studies | 48% ± 8% | |
endothelial cell of vascular tree | 3 studies | 43% ± 11% | |
amacrine cell | 3 studies | 34% ± 5% | |
retinal pigment epithelial cell | 3 studies | 44% ± 16% | |
basal cell | 3 studies | 34% ± 10% | |
endothelial cell of lymphatic vessel | 3 studies | 27% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 5680.90 | 2618 / 2642 | 98% | 17.98 | 691 / 705 |
ovary | 99% | 4835.32 | 179 / 180 | 91% | 7.51 | 391 / 430 |
breast | 98% | 3533.87 | 451 / 459 | 76% | 5.45 | 854 / 1118 |
esophagus | 93% | 1980.66 | 1347 / 1445 | 74% | 5.24 | 136 / 183 |
lung | 99% | 3931.72 | 571 / 578 | 61% | 4.78 | 703 / 1155 |
uterus | 95% | 2109.82 | 162 / 170 | 58% | 3.83 | 266 / 459 |
kidney | 82% | 1281.13 | 73 / 89 | 63% | 8.72 | 568 / 901 |
prostate | 86% | 1344.82 | 210 / 245 | 55% | 2.23 | 276 / 502 |
adipose | 99% | 4511.61 | 1196 / 1204 | 0% | 0 | 0 / 0 |
heart | 98% | 5132.17 | 844 / 861 | 0% | 0 | 0 / 0 |
skin | 72% | 4675.14 | 1304 / 1809 | 25% | 2.78 | 117 / 472 |
intestine | 62% | 1036.15 | 596 / 966 | 26% | 1.09 | 139 / 527 |
stomach | 49% | 679.93 | 176 / 359 | 31% | 1.25 | 90 / 286 |
thymus | 36% | 379.03 | 233 / 653 | 38% | 3.50 | 227 / 605 |
blood vessel | 70% | 1244.12 | 937 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 64% | 5.95 | 29 / 45 |
bladder | 33% | 311.90 | 7 / 21 | 27% | 1.27 | 136 / 504 |
pancreas | 1% | 8.29 | 3 / 328 | 56% | 2.96 | 100 / 178 |
adrenal gland | 22% | 234.66 | 56 / 258 | 22% | 1.16 | 50 / 230 |
muscle | 34% | 384.30 | 274 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 21% | 0.94 | 6 / 29 |
eye | 0% | 0 | 0 / 0 | 16% | 0.79 | 13 / 80 |
liver | 0% | 0 | 0 / 226 | 4% | 0.20 | 17 / 406 |
peripheral blood | 1% | 12.95 | 11 / 929 | 0% | 0 | 0 / 0 |
spleen | 1% | 6.86 | 2 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007155 | Biological process | cell adhesion |
GO_0005911 | Cellular component | cell-cell junction |
GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0005829 | Cellular component | cytosol |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0034451 | Cellular component | centriolar satellite |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
Gene name | PDZD2 |
Protein name | PDZ domain-containing protein 2 (Activated in prostate cancer protein) (PDZ domain-containing protein 3) [Cleaved into: Processed PDZ domain-containing protein 2] Alternative protein PDZD2 PDZ domain containing 2 |
Synonyms | AIPC KIAA0300 PDZK3 |
Description | |
Accessions | L8E9S3 O15018 ENST00000513910.1 ENST00000438447.2 [O15018-1] D6RF66 |