Name | Number of supported studies | Average coverage | |
---|---|---|---|
smooth muscle cell | 30 studies | 42% ± 14% | |
fibroblast | 26 studies | 32% ± 12% | |
pericyte | 18 studies | 28% ± 12% | |
endothelial cell of lymphatic vessel | 12 studies | 25% ± 7% | |
myofibroblast cell | 12 studies | 45% ± 17% | |
astrocyte | 10 studies | 25% ± 9% | |
endothelial cell | 8 studies | 20% ± 4% | |
connective tissue cell | 6 studies | 27% ± 13% | |
adventitial cell | 5 studies | 29% ± 12% | |
cardiac muscle cell | 5 studies | 45% ± 8% | |
muscle cell | 5 studies | 54% ± 24% | |
retinal pigment epithelial cell | 3 studies | 30% ± 11% | |
pancreatic ductal cell | 3 studies | 49% ± 4% | |
endothelial cell of vascular tree | 3 studies | 30% ± 16% | |
myoepithelial cell | 3 studies | 43% ± 15% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
heart | 4 studies | 27% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 71% | 7331.25 | 174 / 245 | 98% | 24.68 | 491 / 502 |
esophagus | 75% | 19838.19 | 1088 / 1445 | 80% | 14.59 | 147 / 183 |
lung | 69% | 4236.65 | 401 / 578 | 83% | 11.38 | 956 / 1155 |
bladder | 86% | 11350.19 | 18 / 21 | 62% | 8.29 | 313 / 504 |
intestine | 73% | 10716.64 | 706 / 966 | 64% | 7.46 | 339 / 527 |
breast | 38% | 2206.34 | 176 / 459 | 82% | 10.03 | 920 / 1118 |
stomach | 44% | 6600.92 | 159 / 359 | 76% | 15.55 | 217 / 286 |
uterus | 85% | 13608.59 | 144 / 170 | 34% | 9.70 | 157 / 459 |
ovary | 38% | 2431.97 | 69 / 180 | 62% | 7.31 | 267 / 430 |
muscle | 100% | 122655.96 | 803 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 24849.14 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 92% | 15045.74 | 788 / 861 | 0% | 0 | 0 / 0 |
pancreas | 1% | 44.44 | 3 / 328 | 89% | 16.12 | 158 / 178 |
thymus | 42% | 2077.04 | 277 / 653 | 45% | 3.75 | 274 / 605 |
brain | 2% | 66.02 | 46 / 2642 | 85% | 11.51 | 597 / 705 |
eye | 0% | 0 | 0 / 0 | 74% | 7.82 | 59 / 80 |
kidney | 3% | 167.46 | 3 / 89 | 68% | 6.30 | 611 / 901 |
skin | 2% | 121.19 | 39 / 1809 | 68% | 10.73 | 322 / 472 |
tonsil | 0% | 0 | 0 / 0 | 60% | 11.86 | 27 / 45 |
adrenal gland | 0% | 27.84 | 1 / 258 | 51% | 5.61 | 117 / 230 |
liver | 1% | 54.88 | 2 / 226 | 35% | 2.18 | 143 / 406 |
lymph node | 0% | 0 | 0 / 0 | 34% | 1.90 | 10 / 29 |
adipose | 34% | 1916.22 | 411 / 1204 | 0% | 0 | 0 / 0 |
spleen | 17% | 802.41 | 41 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 24.03 | 3 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0061061 | Biological process | muscle structure development |
GO_0030036 | Biological process | actin cytoskeleton organization |
GO_0007507 | Biological process | heart development |
GO_0001725 | Cellular component | stress fiber |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0031941 | Cellular component | filamentous actin |
GO_0030018 | Cellular component | Z disc |
GO_0051371 | Molecular function | muscle alpha-actinin binding |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | PDLIM3 |
Protein name | PDZ and LIM domain protein 3 PDZ and LIM domain protein 3 (Actinin-associated LIM protein) (Alpha-actinin-2-associated LIM protein) PDZ and LIM domain 3 |
Synonyms | ALP |
Description | FUNCTION: May play a role in the organization of actin filament arrays within muscle cells. . FUNCTION: May play a role in the organization of actin filament arrays within muscle cells. . |
Accessions | ENST00000284771.7 [Q53GG5-2] ENST00000512293.1 A0A087WYF8 Q53GG5 ENST00000620787.5 ENST00000284770.10 A0A2R8Y6L7 ENST00000505886.5 ENST00000284767.12 [Q53GG5-1] A0A2U3TZH4 D6RAF1 ENST00000643009.1 |