Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| astrocyte | 23 studies | 80% ± 24% | |
| oligodendrocyte | 16 studies | 93% ± 14% | |
| oligodendrocyte precursor cell | 16 studies | 86% ± 22% | |
| endothelial cell | 13 studies | 44% ± 26% | |
| fibroblast | 13 studies | 39% ± 22% | |
| glutamatergic neuron | 12 studies | 84% ± 16% | |
| GABAergic neuron | 11 studies | 76% ± 19% | |
| B cell | 11 studies | 28% ± 9% | |
| adipocyte | 10 studies | 54% ± 23% | |
| microglial cell | 9 studies | 58% ± 20% | |
| neuron | 8 studies | 50% ± 24% | |
| naive B cell | 8 studies | 23% ± 10% | |
| type II pneumocyte | 7 studies | 27% ± 7% | |
| amacrine cell | 7 studies | 46% ± 18% | |
| pericyte | 7 studies | 32% ± 15% | |
| retinal ganglion cell | 7 studies | 93% ± 10% | |
| interneuron | 6 studies | 62% ± 21% | |
| retina horizontal cell | 6 studies | 58% ± 10% | |
| cardiac muscle cell | 6 studies | 67% ± 19% | |
| Mueller cell | 6 studies | 44% ± 16% | |
| smooth muscle cell | 6 studies | 39% ± 13% | |
| retinal bipolar neuron | 5 studies | 48% ± 7% | |
| glial cell | 5 studies | 44% ± 23% | |
| OFF-bipolar cell | 5 studies | 76% ± 24% | |
| ON-bipolar cell | 5 studies | 67% ± 25% | |
| precursor B cell | 5 studies | 60% ± 11% | |
| connective tissue cell | 4 studies | 22% ± 6% | |
| granule cell | 4 studies | 62% ± 22% | |
| GABAergic amacrine cell | 4 studies | 53% ± 23% | |
| kidney loop of Henle epithelial cell | 4 studies | 45% ± 25% | |
| immature B cell | 4 studies | 59% ± 18% | |
| mesothelial cell | 4 studies | 40% ± 22% | |
| hepatic stellate cell | 3 studies | 34% ± 8% | |
| T cell | 3 studies | 29% ± 16% | |
| macrophage | 3 studies | 53% ± 13% | |
| podocyte | 3 studies | 29% ± 11% | |
| progenitor cell | 3 studies | 38% ± 18% | |
| differentiation-committed oligodendrocyte precursor | 3 studies | 81% ± 18% | |
| GABAergic interneuron | 3 studies | 70% ± 15% | |
| glycinergic amacrine cell | 3 studies | 30% ± 13% | |
| rod bipolar cell | 3 studies | 26% ± 4% | |
| ependymal cell | 3 studies | 57% ± 16% | |
| Schwann cell | 3 studies | 40% ± 7% | |
| type I pneumocyte | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| brain | 100% | 6242.52 | 2642 / 2642 | 98% | 11.86 | 694 / 705 |
| heart | 92% | 1762.91 | 788 / 861 | 0% | 0 | 0 / 0 |
| stomach | 84% | 1101.77 | 300 / 359 | 7% | 0.14 | 19 / 286 |
| thymus | 69% | 652.43 | 452 / 653 | 21% | 0.59 | 126 / 605 |
| adrenal gland | 21% | 167.86 | 55 / 258 | 60% | 4.70 | 138 / 230 |
| adipose | 77% | 813.04 | 929 / 1204 | 0% | 0 | 0 / 0 |
| esophagus | 62% | 1719.49 | 892 / 1445 | 5% | 0.17 | 10 / 183 |
| prostate | 59% | 526.16 | 144 / 245 | 8% | 0.17 | 38 / 502 |
| skin | 23% | 306.93 | 422 / 1809 | 36% | 1.94 | 171 / 472 |
| blood vessel | 57% | 565.05 | 761 / 1335 | 0% | 0 | 0 / 0 |
| intestine | 48% | 434.87 | 462 / 966 | 3% | 0.06 | 17 / 527 |
| breast | 45% | 453.02 | 208 / 459 | 4% | 0.51 | 47 / 1118 |
| pancreas | 30% | 238.37 | 97 / 328 | 15% | 0.24 | 27 / 178 |
| lung | 32% | 298.69 | 184 / 578 | 10% | 0.31 | 114 / 1155 |
| kidney | 34% | 277.00 | 30 / 89 | 5% | 0.12 | 42 / 901 |
| bladder | 33% | 257.24 | 7 / 21 | 4% | 0.10 | 20 / 504 |
| liver | 21% | 159.72 | 48 / 226 | 4% | 0.15 | 15 / 406 |
| lymph node | 0% | 0 | 0 / 0 | 24% | 0.72 | 7 / 29 |
| uterus | 14% | 105.05 | 24 / 170 | 8% | 0.17 | 37 / 459 |
| spleen | 22% | 182.49 | 53 / 241 | 0% | 0 | 0 / 0 |
| muscle | 8% | 53.65 | 62 / 803 | 0% | 0 | 0 / 0 |
| ovary | 6% | 55.98 | 10 / 180 | 1% | 0.02 | 6 / 430 |
| eye | 0% | 0 | 0 / 0 | 1% | 0.03 | 1 / 80 |
| peripheral blood | 0% | 1.99 | 3 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 45 |
| ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
| GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
| GO_0007155 | Biological process | cell adhesion |
| GO_0030900 | Biological process | forebrain development |
| GO_0005886 | Cellular component | plasma membrane |
| GO_0030426 | Cellular component | growth cone |
| GO_0044291 | Cellular component | cell-cell contact zone |
| GO_0005509 | Molecular function | calcium ion binding |
| Gene name | PCDH9 |
| Protein name | Protocadherin-9 PCDH9 protein (Protocadherin 9) Protocadherin 9 isoform A PCDH9 protein Protocadherin 9 |
| Synonyms | hCG_2026614 |
| Description | FUNCTION: Potential calcium-dependent cell-adhesion protein. |
| Accessions | ENST00000544246.5 [Q9HC56-2] B7ZM79 Q5VT82 A0A087WZW0 ENST00000377865.7 [Q9HC56-1] Q9HC56 ENST00000614931.1 ENST00000377861.4 A7E2D9 X5D7N0 ENST00000456367.5 |