Name | Number of supported studies | Average coverage | |
---|---|---|---|
plasmacytoid dendritic cell | 13 studies | 37% ± 12% | |
glutamatergic neuron | 4 studies | 45% ± 23% | |
conventional dendritic cell | 3 studies | 30% ± 10% | |
extravillous trophoblast | 3 studies | 28% ± 11% | |
alveolar macrophage | 3 studies | 17% ± 1% | |
GABAergic neuron | 3 studies | 27% ± 8% |
Insufficient scRNA-seq data for expression of OPN3 at tissue level.
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
skin | 99% | 318.46 | 1792 / 1809 | 89% | 6.38 | 421 / 472 |
breast | 99% | 89.75 | 453 / 459 | 87% | 3.26 | 975 / 1118 |
lung | 99% | 194.22 | 571 / 578 | 85% | 4.40 | 979 / 1155 |
liver | 100% | 208.54 | 226 / 226 | 80% | 2.71 | 324 / 406 |
ovary | 96% | 87.62 | 172 / 180 | 83% | 3.20 | 358 / 430 |
thymus | 100% | 140.27 | 650 / 653 | 79% | 1.86 | 475 / 605 |
kidney | 100% | 127.42 | 89 / 89 | 77% | 2.40 | 691 / 901 |
intestine | 94% | 153.12 | 905 / 966 | 79% | 1.93 | 417 / 527 |
esophagus | 84% | 92.66 | 1216 / 1445 | 84% | 2.65 | 154 / 183 |
stomach | 94% | 99.78 | 336 / 359 | 69% | 1.56 | 197 / 286 |
pancreas | 74% | 43.45 | 242 / 328 | 82% | 2.01 | 146 / 178 |
bladder | 81% | 57.95 | 17 / 21 | 70% | 2.12 | 353 / 504 |
uterus | 82% | 47.05 | 140 / 170 | 67% | 1.84 | 309 / 459 |
brain | 74% | 110.00 | 1963 / 2642 | 40% | 0.80 | 285 / 705 |
adrenal gland | 93% | 88.73 | 241 / 258 | 13% | 0.24 | 29 / 230 |
spleen | 100% | 148.76 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 98% | 92.57 | 1183 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 93% | 73.87 | 1243 / 1335 | 0% | 0 | 0 / 0 |
prostate | 73% | 36.92 | 178 / 245 | 18% | 0.26 | 92 / 502 |
peripheral blood | 90% | 126.57 | 835 / 929 | 0% | 0 | 0 / 0 |
muscle | 70% | 35.75 | 563 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 69% | 1.55 | 31 / 45 |
heart | 69% | 44.34 | 590 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 48% | 1.06 | 14 / 29 |
eye | 0% | 0 | 0 / 0 | 33% | 0.55 | 26 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0030216 | Biological process | keratinocyte differentiation |
GO_0046326 | Biological process | positive regulation of glucose import |
GO_0007602 | Biological process | phototransduction |
GO_0071482 | Biological process | cellular response to light stimulus |
GO_0009583 | Biological process | detection of light stimulus |
GO_0042752 | Biological process | regulation of circadian rhythm |
GO_0048022 | Biological process | negative regulation of melanin biosynthetic process |
GO_0007186 | Biological process | G protein-coupled receptor signaling pathway |
GO_0043066 | Biological process | negative regulation of apoptotic process |
GO_0009584 | Biological process | detection of visible light |
GO_0048023 | Biological process | positive regulation of melanin biosynthetic process |
GO_0009637 | Biological process | response to blue light |
GO_0071492 | Biological process | cellular response to UV-A |
GO_1901857 | Biological process | positive regulation of cellular respiration |
GO_0005886 | Cellular component | plasma membrane |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0016020 | Cellular component | membrane |
GO_0005737 | Cellular component | cytoplasm |
GO_0004930 | Molecular function | G protein-coupled receptor activity |
GO_0008020 | Molecular function | G protein-coupled photoreceptor activity |
GO_0005503 | Molecular function | all-trans retinal binding |
GO_0005502 | Molecular function | 11-cis retinal binding |
GO_0005515 | Molecular function | protein binding |
GO_0009881 | Molecular function | photoreceptor activity |
Gene name | OPN3 |
Protein name | Alternative protein OPN3 Opsin 3 Opsin-3 (Encephalopsin) (Panopsin) |
Synonyms | hCG_1989351 ECPN |
Description | FUNCTION: G-protein coupled receptor which selectively activates G proteins via ultraviolet A (UVA) light-mediated activation in the skin . Binds both 11-cis retinal and all-trans retinal . Regulates melanogenesis in melanocytes via inhibition of alpha-MSH-induced MC1R-mediated cAMP signaling, modulation of calcium flux, regulation of CAMK2 phosphorylation, and subsequently phosphorylation of CREB, p38, ERK and MITF in response to blue light . Plays a role in melanocyte survival through regulation of intracellular calcium levels and subsequent BCL2/RAF1 signaling . Additionally regulates apoptosis via cytochrome c release and subsequent activation of the caspase cascade . Required for TYR and DCT blue light-induced complex formation in melanocytes . Involved in keratinocyte differentiation in response to blue-light . Required for the UVA-mediated induction of calcium and mitogen-activated protein kinase signaling resulting in the expression of MMP1, MMP2, MMP3, MMP9 and TIMP1 in dermal fibroblasts . Plays a role in light-mediated glucose uptake, mitochondrial respiration and fatty acid metabolism in brown adipocyte tissues (By similarity). May be involved in photorelaxation of airway smooth muscle cells, via blue-light dependent GPCR signaling pathways (By similarity). . |
Accessions | L8E9L4 ENST00000478849.1 ENST00000366554.3 [Q9H1Y3-1] ENST00000469376.5 Q6GMT1 Q6P5W7 ENST00000490673.5 A0A1B0GUF8 Q9H1Y3 |