Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 22 studies | 75% ± 25% | |
oligodendrocyte | 16 studies | 72% ± 18% | |
oligodendrocyte precursor cell | 15 studies | 87% ± 17% | |
mast cell | 15 studies | 51% ± 27% | |
glutamatergic neuron | 12 studies | 75% ± 15% | |
GABAergic neuron | 11 studies | 71% ± 18% | |
type I pneumocyte | 10 studies | 48% ± 18% | |
retinal cone cell | 9 studies | 82% ± 23% | |
retinal rod cell | 9 studies | 82% ± 21% | |
amacrine cell | 8 studies | 46% ± 20% | |
microglial cell | 8 studies | 42% ± 18% | |
adipocyte | 8 studies | 45% ± 18% | |
endothelial cell | 7 studies | 44% ± 18% | |
retinal ganglion cell | 7 studies | 87% ± 18% | |
interneuron | 6 studies | 64% ± 19% | |
neuron | 5 studies | 47% ± 15% | |
smooth muscle cell | 5 studies | 32% ± 6% | |
retinal bipolar neuron | 5 studies | 41% ± 7% | |
glial cell | 4 studies | 42% ± 14% | |
granule cell | 4 studies | 71% ± 18% | |
mesothelial cell | 4 studies | 32% ± 16% | |
OFF-bipolar cell | 4 studies | 54% ± 26% | |
ON-bipolar cell | 4 studies | 60% ± 21% | |
fibroblast | 4 studies | 26% ± 6% | |
macrophage | 3 studies | 29% ± 8% | |
progenitor cell | 3 studies | 35% ± 22% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 82% ± 8% | |
GABAergic interneuron | 3 studies | 70% ± 6% | |
pericyte | 3 studies | 38% ± 21% | |
retina horizontal cell | 3 studies | 34% ± 4% | |
Mueller cell | 3 studies | 29% ± 15% | |
GABAergic amacrine cell | 3 studies | 77% ± 4% | |
glycinergic amacrine cell | 3 studies | 41% ± 10% | |
rod bipolar cell | 3 studies | 74% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 6650.93 | 2642 / 2642 | 99% | 49.84 | 701 / 705 |
lung | 68% | 1922.34 | 391 / 578 | 68% | 6.65 | 791 / 1155 |
intestine | 59% | 988.10 | 568 / 966 | 47% | 4.60 | 246 / 527 |
breast | 13% | 112.16 | 61 / 459 | 83% | 8.71 | 930 / 1118 |
esophagus | 52% | 848.44 | 754 / 1445 | 41% | 2.91 | 75 / 183 |
pancreas | 0% | 0 | 0 / 328 | 87% | 18.53 | 154 / 178 |
bladder | 19% | 234.33 | 4 / 21 | 48% | 4.34 | 244 / 504 |
skin | 31% | 289.64 | 568 / 1809 | 25% | 4.59 | 117 / 472 |
stomach | 10% | 103.21 | 35 / 359 | 46% | 3.56 | 131 / 286 |
heart | 50% | 1541.61 | 433 / 861 | 0% | 0 | 0 / 0 |
kidney | 7% | 44.94 | 6 / 89 | 41% | 4.69 | 367 / 901 |
thymus | 3% | 22.48 | 21 / 653 | 40% | 4.31 | 243 / 605 |
tonsil | 0% | 0 | 0 / 0 | 33% | 2.24 | 15 / 45 |
ovary | 1% | 5.66 | 1 / 180 | 32% | 2.64 | 138 / 430 |
adipose | 31% | 310.09 | 374 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 11% | 120.48 | 28 / 258 | 20% | 1.76 | 45 / 230 |
prostate | 11% | 87.22 | 28 / 245 | 19% | 2.00 | 95 / 502 |
uterus | 0% | 0 | 0 / 170 | 23% | 2.08 | 105 / 459 |
liver | 0% | 0 | 0 / 226 | 14% | 1.08 | 56 / 406 |
blood vessel | 12% | 114.11 | 159 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 3% | 0.19 | 1 / 29 |
eye | 0% | 0 | 0 / 0 | 1% | 0.32 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
muscle | 0% | 0 | 0 / 803 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0008038 | Biological process | neuron recognition |
GO_0007155 | Biological process | cell adhesion |
GO_0098552 | Cellular component | side of membrane |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0005515 | Molecular function | protein binding |
Gene name | NTM |
Protein name | Neurotrimin (hNT) (IgLON family member 2) Neurotrimin |
Synonyms | UNQ297/PRO337 IGLON2 NT |
Description | FUNCTION: Neural cell adhesion molecule. |
Accessions | F8VTR5 Q9P121 ENST00000683400.1 ENST00000457381.1 B7Z1Z5 F6WFR7 ENST00000374786.5 [Q9P121-1] F8W8Y1 ENST00000436745.5 ENST00000550167.5 ENST00000374791.7 [Q9P121-2] C9JK95 ENST00000539799.5 ENST00000374784.5 [Q9P121-3] ENST00000425719.6 [Q9P121-4] ENST00000416661.1 C9J0V2 H7BZ62 ENST00000427481.6 |