Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 16 studies | 36% ± 15% | |
smooth muscle cell | 15 studies | 19% ± 4% | |
astrocyte | 15 studies | 35% ± 16% | |
macrophage | 13 studies | 22% ± 7% | |
pericyte | 10 studies | 20% ± 5% | |
fibroblast | 9 studies | 22% ± 6% | |
basal cell | 8 studies | 29% ± 16% | |
classical monocyte | 8 studies | 23% ± 9% | |
endothelial cell | 8 studies | 32% ± 9% | |
epithelial cell | 8 studies | 37% ± 18% | |
oligodendrocyte | 8 studies | 26% ± 7% | |
oligodendrocyte precursor cell | 7 studies | 32% ± 13% | |
myofibroblast cell | 6 studies | 20% ± 3% | |
glutamatergic neuron | 6 studies | 39% ± 22% | |
abnormal cell | 6 studies | 24% ± 11% | |
monocyte | 6 studies | 19% ± 6% | |
cardiac muscle cell | 6 studies | 35% ± 6% | |
GABAergic neuron | 6 studies | 38% ± 20% | |
type I pneumocyte | 5 studies | 21% ± 4% | |
ionocyte | 5 studies | 29% ± 7% | |
non-classical monocyte | 5 studies | 30% ± 11% | |
conventional dendritic cell | 5 studies | 31% ± 17% | |
adipocyte | 5 studies | 18% ± 3% | |
interneuron | 5 studies | 35% ± 23% | |
hematopoietic precursor cell | 4 studies | 22% ± 10% | |
B cell | 4 studies | 18% ± 3% | |
kidney loop of Henle epithelial cell | 4 studies | 28% ± 6% | |
renal alpha-intercalated cell | 4 studies | 40% ± 5% | |
luminal hormone-sensing cell of mammary gland | 4 studies | 22% ± 3% | |
microglial cell | 4 studies | 24% ± 7% | |
dendritic cell | 4 studies | 36% ± 16% | |
goblet cell | 4 studies | 23% ± 5% | |
CD4-positive, alpha-beta T cell | 3 studies | 18% ± 2% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 23% ± 6% | |
retinal ganglion cell | 3 studies | 47% ± 23% | |
brush cell | 3 studies | 28% ± 6% | |
club cell | 3 studies | 21% ± 5% | |
endothelial cell of lymphatic vessel | 3 studies | 19% ± 6% | |
retinal cone cell | 3 studies | 20% ± 3% | |
Mueller cell | 3 studies | 22% ± 1% | |
rod bipolar cell | 3 studies | 16% ± 0% | |
muscle cell | 3 studies | 33% ± 8% | |
natural killer cell | 3 studies | 16% ± 1% | |
ependymal cell | 3 studies | 39% ± 12% | |
enteroendocrine cell | 3 studies | 21% ± 6% | |
intestinal crypt stem cell | 3 studies | 26% ± 3% | |
neuron | 3 studies | 35% ± 14% | |
connective tissue cell | 3 studies | 21% ± 6% | |
plasmacytoid dendritic cell | 3 studies | 24% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 3585.52 | 459 / 459 | 100% | 62.91 | 1118 / 1118 |
ovary | 100% | 2660.17 | 180 / 180 | 100% | 59.03 | 430 / 430 |
prostate | 100% | 3488.61 | 245 / 245 | 100% | 59.39 | 502 / 502 |
brain | 100% | 3892.50 | 2638 / 2642 | 100% | 112.12 | 705 / 705 |
thymus | 100% | 4702.04 | 653 / 653 | 100% | 50.00 | 602 / 605 |
intestine | 100% | 4284.68 | 966 / 966 | 99% | 46.72 | 524 / 527 |
uterus | 100% | 3344.73 | 170 / 170 | 99% | 37.82 | 456 / 459 |
stomach | 100% | 3046.59 | 359 / 359 | 99% | 43.96 | 284 / 286 |
bladder | 100% | 3487.29 | 21 / 21 | 99% | 41.13 | 499 / 504 |
lung | 99% | 2559.65 | 572 / 578 | 100% | 57.02 | 1155 / 1155 |
esophagus | 99% | 3468.18 | 1427 / 1445 | 100% | 47.47 | 183 / 183 |
kidney | 100% | 3640.91 | 89 / 89 | 99% | 47.57 | 889 / 901 |
pancreas | 99% | 1925.21 | 324 / 328 | 98% | 29.24 | 175 / 178 |
adrenal gland | 100% | 5703.40 | 258 / 258 | 96% | 26.10 | 221 / 230 |
skin | 99% | 2179.02 | 1795 / 1809 | 94% | 36.74 | 443 / 472 |
adipose | 100% | 3138.87 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 22.96 | 29 / 29 |
muscle | 100% | 20969.54 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1892.72 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.61 | 45 / 45 |
blood vessel | 100% | 2823.64 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 97% | 9091.18 | 839 / 861 | 0% | 0 | 0 / 0 |
liver | 23% | 226.74 | 53 / 226 | 47% | 9.26 | 189 / 406 |
eye | 0% | 0 | 0 / 0 | 70% | 17.15 | 56 / 80 |
peripheral blood | 53% | 1108.52 | 497 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0000423 | Biological process | mitophagy |
GO_0007005 | Biological process | mitochondrion organization |
GO_0006119 | Biological process | oxidative phosphorylation |
GO_1901843 | Biological process | positive regulation of high voltage-gated calcium channel activity |
GO_0005741 | Cellular component | mitochondrial outer membrane |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NIPSNAP2 |
Protein name | Protein NipSnap homolog 2 (NipSnap2) (Glioblastoma-amplified sequence) Nipsnap homolog 2 |
Synonyms | GBAS |
Description | FUNCTION: May act as a positive regulator of L-type calcium channels. . |
Accessions | ENST00000437587.5 C9K068 C9J7B1 ENST00000415967.2 H7C333 F8WBI5 ENST00000446692.5 ENST00000456204.5 ENST00000322090.8 [O75323-1] ENST00000446778.5 [O75323-2] O75323 |