Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte | 16 studies | 58% ± 20% | |
oligodendrocyte precursor cell | 12 studies | 39% ± 14% | |
glutamatergic neuron | 11 studies | 54% ± 25% | |
astrocyte | 11 studies | 30% ± 17% | |
smooth muscle cell | 10 studies | 27% ± 12% | |
GABAergic neuron | 10 studies | 50% ± 25% | |
neuron | 7 studies | 47% ± 16% | |
endothelial cell | 7 studies | 34% ± 17% | |
amacrine cell | 7 studies | 41% ± 20% | |
retinal rod cell | 7 studies | 36% ± 19% | |
pericyte | 7 studies | 37% ± 17% | |
retinal ganglion cell | 7 studies | 37% ± 16% | |
interneuron | 6 studies | 56% ± 21% | |
retina horizontal cell | 6 studies | 49% ± 13% | |
retinal bipolar neuron | 4 studies | 30% ± 4% | |
granule cell | 4 studies | 36% ± 15% | |
fibroblast | 4 studies | 29% ± 8% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 63% ± 18% | |
GABAergic interneuron | 3 studies | 55% ± 11% | |
microglial cell | 3 studies | 27% ± 11% | |
GABAergic amacrine cell | 3 studies | 27% ± 10% | |
ON-bipolar cell | 3 studies | 30% ± 11% | |
glycinergic amacrine cell | 3 studies | 32% ± 4% | |
rod bipolar cell | 3 studies | 51% ± 11% | |
podocyte | 3 studies | 73% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 13686.56 | 2637 / 2642 | 99% | 37.55 | 700 / 705 |
adrenal gland | 97% | 6585.10 | 251 / 258 | 83% | 15.95 | 192 / 230 |
prostate | 98% | 8484.84 | 239 / 245 | 73% | 3.71 | 366 / 502 |
kidney | 100% | 14253.66 | 89 / 89 | 53% | 3.88 | 474 / 901 |
esophagus | 95% | 9099.82 | 1374 / 1445 | 56% | 3.54 | 103 / 183 |
uterus | 98% | 9067.88 | 166 / 170 | 38% | 1.73 | 176 / 459 |
intestine | 94% | 7499.87 | 907 / 966 | 35% | 1.62 | 184 / 527 |
breast | 70% | 2308.67 | 320 / 459 | 56% | 4.96 | 627 / 1118 |
ovary | 98% | 7390.07 | 176 / 180 | 27% | 1.56 | 115 / 430 |
lung | 89% | 3443.99 | 515 / 578 | 34% | 1.99 | 393 / 1155 |
bladder | 95% | 4787.14 | 20 / 21 | 23% | 1.05 | 116 / 504 |
skin | 75% | 2042.95 | 1363 / 1809 | 25% | 1.86 | 120 / 472 |
stomach | 54% | 2527.90 | 194 / 359 | 43% | 2.38 | 123 / 286 |
spleen | 93% | 5123.01 | 225 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 92% | 5450.64 | 1233 / 1335 | 0% | 0 | 0 / 0 |
heart | 90% | 5185.19 | 774 / 861 | 0% | 0 | 0 / 0 |
thymus | 80% | 2412.82 | 520 / 653 | 6% | 0.20 | 39 / 605 |
pancreas | 19% | 416.44 | 61 / 328 | 63% | 4.78 | 112 / 178 |
adipose | 72% | 3168.81 | 870 / 1204 | 0% | 0 | 0 / 0 |
liver | 27% | 678.04 | 60 / 226 | 21% | 0.73 | 85 / 406 |
tonsil | 0% | 0 | 0 / 0 | 29% | 0.80 | 13 / 45 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.60 | 4 / 29 |
muscle | 4% | 91.31 | 36 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 4% | 0.45 | 3 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007420 | Biological process | brain development |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0007422 | Biological process | peripheral nervous system development |
GO_0042552 | Biological process | myelination |
GO_0007411 | Biological process | axon guidance |
GO_0030424 | Cellular component | axon |
GO_0043194 | Cellular component | axon initial segment |
GO_0005886 | Cellular component | plasma membrane |
GO_0033010 | Cellular component | paranodal junction |
GO_0033268 | Cellular component | node of Ranvier |
GO_0101003 | Cellular component | ficolin-1-rich granule membrane |
GO_0005925 | Cellular component | focal adhesion |
GO_0098632 | Molecular function | cell-cell adhesion mediator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NFASC |
Protein name | Neurofascin |
Synonyms | KIAA0756 |
Description | FUNCTION: Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions. . |
Accessions | ENST00000447819.1 ENST00000505079.5 A0A0C4DG92 ENST00000367173.7 O94856 H7C0L6 ENST00000404076.5 [O94856-10] A0A7P0Z4R6 ENST00000539706.6 [O94856-11] ENST00000425360.5 ENST00000403080.5 [O94856-2] H7BY57 X6RKN2 ENST00000680427.1 D6RHX4 H7C073 ENST00000401399.5 [O94856-9] ENST00000504476.5 D6RBU5 ENST00000339876.11 [O94856-9] ENST00000413225.5 ENST00000430393 ENST00000513543.6 [O94856-3] ENST00000430393.7 [O94856-8] |