Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 7 studies | 37% ± 24% | |
goblet cell | 6 studies | 40% ± 15% | |
retinal cone cell | 6 studies | 37% ± 6% | |
retinal rod cell | 6 studies | 35% ± 15% | |
non-classical monocyte | 4 studies | 30% ± 9% | |
neuron | 4 studies | 20% ± 2% | |
GABAergic neuron | 4 studies | 43% ± 18% | |
retinal bipolar neuron | 3 studies | 19% ± 3% | |
rod bipolar cell | 3 studies | 21% ± 3% | |
enteroendocrine cell | 3 studies | 32% ± 10% | |
interneuron | 3 studies | 38% ± 21% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
pancreas | 98% | 1619.79 | 322 / 328 | 77% | 14.61 | 137 / 178 |
brain | 93% | 6464.65 | 2466 / 2642 | 75% | 10.37 | 531 / 705 |
uterus | 89% | 2778.52 | 152 / 170 | 52% | 6.11 | 239 / 459 |
intestine | 42% | 1211.65 | 410 / 966 | 61% | 8.06 | 320 / 527 |
muscle | 100% | 6392.78 | 803 / 803 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.72 | 1 / 1 |
bladder | 62% | 1985.00 | 13 / 21 | 36% | 4.15 | 180 / 504 |
adrenal gland | 7% | 98.12 | 19 / 258 | 72% | 31.37 | 165 / 230 |
tonsil | 0% | 0 | 0 / 0 | 67% | 8.04 | 30 / 45 |
breast | 0% | 4.30 | 1 / 459 | 63% | 11.27 | 705 / 1118 |
stomach | 15% | 147.56 | 55 / 359 | 48% | 4.79 | 137 / 286 |
ovary | 9% | 65.68 | 16 / 180 | 43% | 5.08 | 183 / 430 |
esophagus | 0% | 1.07 | 2 / 1445 | 43% | 3.42 | 79 / 183 |
eye | 0% | 0 | 0 / 0 | 31% | 2.50 | 25 / 80 |
lung | 0% | 0 | 0 / 578 | 26% | 2.99 | 303 / 1155 |
prostate | 6% | 66.28 | 15 / 245 | 15% | 0.69 | 76 / 502 |
kidney | 9% | 66.43 | 8 / 89 | 9% | 1.47 | 83 / 901 |
skin | 0% | 2.25 | 2 / 1809 | 17% | 2.08 | 80 / 472 |
liver | 0% | 3.75 | 1 / 226 | 15% | 1.11 | 61 / 406 |
lymph node | 0% | 0 | 0 / 0 | 14% | 0.60 | 4 / 29 |
thymus | 0% | 2.28 | 1 / 653 | 12% | 0.65 | 75 / 605 |
peripheral blood | 8% | 66.63 | 71 / 929 | 0% | 0 | 0 / 0 |
spleen | 2% | 14.02 | 4 / 241 | 0% | 0 | 0 / 0 |
adipose | 0% | 0.62 | 1 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 1.41 | 1 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007288 | Biological process | sperm axoneme assembly |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0048170 | Biological process | positive regulation of long-term neuronal synaptic plasticity |
GO_0007519 | Biological process | skeletal muscle tissue development |
GO_0007219 | Biological process | Notch signaling pathway |
GO_0006417 | Biological process | regulation of translation |
GO_0051491 | Biological process | positive regulation of filopodium assembly |
GO_0060999 | Biological process | positive regulation of dendritic spine development |
GO_0071230 | Biological process | cellular response to amino acid stimulus |
GO_0090129 | Biological process | positive regulation of synapse maturation |
GO_0007595 | Biological process | lactation |
GO_0006513 | Biological process | protein monoubiquitination |
GO_0045746 | Biological process | negative regulation of Notch signaling pathway |
GO_0043065 | Biological process | positive regulation of apoptotic process |
GO_0007399 | Biological process | nervous system development |
GO_0005886 | Cellular component | plasma membrane |
GO_0043197 | Cellular component | dendritic spine |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0043204 | Cellular component | perikaryon |
GO_0014069 | Cellular component | postsynaptic density |
GO_0097440 | Cellular component | apical dendrite |
GO_0061630 | Molecular function | ubiquitin protein ligase activity |
GO_0045183 | Molecular function | translation factor activity, non-nucleic acid binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NEURL1 |
Protein name | E3 ubiquitin-protein ligase NEURL1 (EC 2.3.2.27) (Neuralized-like protein 1A) (h-neu) (h-neuralized 1) (RING finger protein 67) (RING-type E3 ubiquitin transferase NEURL1) Neuralized E3 ubiquitin protein ligase 1 |
Synonyms | RNF67 NEURL1A NEURL |
Description | FUNCTION: Plays a role in hippocampal-dependent synaptic plasticity, learning and memory. Involved in the formation of spines and functional synaptic contacts by modulating the translational activity of the cytoplasmic polyadenylation element-binding protein CPEB3. Promotes ubiquitination of CPEB3, and hence induces CPEB3-dependent mRNA translation activation of glutamate receptor GRIA1 and GRIA2. Can function as an E3 ubiquitin-protein ligase to activate monoubiquitination of JAG1 (in vitro), thereby regulating the Notch pathway. Acts as a tumor suppressor; inhibits malignant cell transformation of medulloblastoma (MB) cells by inhibiting the Notch signaling pathway. . |
Accessions | X6RLA8 O76050 ENST00000369780.9 [O76050-1] X6RBV8 ENST00000455386.1 ENST00000437579.1 |