Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 29 studies | 39% ± 15% | |
microglial cell | 12 studies | 54% ± 18% | |
glutamatergic neuron | 11 studies | 39% ± 23% | |
pericyte | 10 studies | 29% ± 11% | |
macrophage | 10 studies | 37% ± 18% | |
fibroblast | 10 studies | 26% ± 10% | |
oligodendrocyte precursor cell | 9 studies | 27% ± 10% | |
mast cell | 9 studies | 28% ± 7% | |
GABAergic neuron | 8 studies | 46% ± 24% | |
smooth muscle cell | 7 studies | 29% ± 7% | |
capillary endothelial cell | 7 studies | 26% ± 13% | |
interneuron | 6 studies | 46% ± 21% | |
endothelial cell of lymphatic vessel | 6 studies | 37% ± 13% | |
astrocyte | 6 studies | 28% ± 12% | |
neuron | 5 studies | 37% ± 14% | |
endothelial cell of artery | 5 studies | 24% ± 8% | |
B cell | 5 studies | 29% ± 9% | |
granule cell | 4 studies | 44% ± 18% | |
cardiac muscle cell | 4 studies | 24% ± 5% | |
dendritic cell | 4 studies | 21% ± 2% | |
vein endothelial cell | 4 studies | 42% ± 31% | |
retinal cone cell | 4 studies | 51% ± 17% | |
endothelial cell of vascular tree | 4 studies | 49% ± 24% | |
myeloid cell | 4 studies | 36% ± 15% | |
monocyte | 4 studies | 24% ± 6% | |
type I pneumocyte | 4 studies | 22% ± 6% | |
glomerular endothelial cell | 3 studies | 18% ± 1% | |
GABAergic interneuron | 3 studies | 31% ± 6% | |
epithelial cell | 3 studies | 31% ± 12% | |
amacrine cell | 3 studies | 29% ± 9% | |
retinal rod cell | 3 studies | 34% ± 16% | |
hepatocyte | 3 studies | 43% ± 24% | |
connective tissue cell | 3 studies | 20% ± 2% | |
T cell | 3 studies | 18% ± 3% | |
alveolar macrophage | 3 studies | 30% ± 8% | |
natural killer cell | 3 studies | 19% ± 2% | |
lymphocyte | 3 studies | 31% ± 9% | |
basal cell | 3 studies | 38% ± 25% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 2563.18 | 359 / 359 | 99% | 16.61 | 284 / 286 |
intestine | 100% | 2946.49 | 965 / 966 | 99% | 16.99 | 523 / 527 |
esophagus | 100% | 2828.79 | 1440 / 1445 | 99% | 13.77 | 182 / 183 |
skin | 100% | 3102.55 | 1808 / 1809 | 98% | 16.45 | 461 / 472 |
lung | 100% | 3274.95 | 578 / 578 | 98% | 9.49 | 1127 / 1155 |
breast | 100% | 3589.15 | 459 / 459 | 97% | 11.57 | 1085 / 1118 |
prostate | 100% | 2422.37 | 244 / 245 | 97% | 11.26 | 489 / 502 |
kidney | 100% | 2287.66 | 89 / 89 | 97% | 16.86 | 872 / 901 |
thymus | 100% | 1678.53 | 650 / 653 | 96% | 9.03 | 579 / 605 |
bladder | 100% | 2766.90 | 21 / 21 | 94% | 9.93 | 473 / 504 |
uterus | 100% | 3941.25 | 170 / 170 | 93% | 8.36 | 425 / 459 |
ovary | 100% | 1791.54 | 180 / 180 | 80% | 5.29 | 343 / 430 |
adrenal gland | 97% | 911.82 | 251 / 258 | 76% | 5.78 | 174 / 230 |
brain | 79% | 1997.15 | 2097 / 2642 | 93% | 6.29 | 657 / 705 |
liver | 88% | 761.92 | 200 / 226 | 72% | 4.76 | 292 / 406 |
pancreas | 52% | 376.66 | 171 / 328 | 99% | 15.79 | 176 / 178 |
adipose | 100% | 3366.14 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3865.04 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 15.83 | 29 / 29 |
spleen | 100% | 2544.68 | 241 / 241 | 0% | 0 | 0 / 0 |
heart | 97% | 1049.35 | 836 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 11.80 | 76 / 80 |
tonsil | 0% | 0 | 0 / 0 | 93% | 7.57 | 42 / 45 |
muscle | 46% | 327.66 | 369 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 39% | 1549.14 | 364 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_1990869 | Biological process | cellular response to chemokine |
GO_0034260 | Biological process | negative regulation of GTPase activity |
GO_2000405 | Biological process | negative regulation of T cell migration |
GO_0005737 | Cellular component | cytoplasm |
GO_0005515 | Molecular function | protein binding |
Gene name | LRCH1 |
Protein name | LRCH1 protein Leucine-rich repeat and calponin homology domain-containing protein 1 (Calponin homology domain-containing protein 1) (Neuronal protein 81) (NP81) Leucine rich repeats and calponin homology domain containing 1 |
Synonyms | KIAA1016 CHDC1 |
Description | FUNCTION: Acts as a negative regulator of GTPase CDC42 by sequestering CDC42-guanine exchange factor DOCK8. Probably by preventing CDC42 activation, negatively regulates CD4(+) T-cell migration. . |
Accessions | C9JWE0 Q8TAR8 ENST00000389797.8 [Q9Y2L9-3] Q9Y2L9 ENST00000389798.7 [Q9Y2L9-1] ENST00000311191.10 [Q9Y2L9-2] ENST00000463929.5 ENST00000478412.1 C9J5B8 |