Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 18 studies | 43% ± 13% | |
epithelial cell | 17 studies | 41% ± 16% | |
basal cell | 14 studies | 38% ± 16% | |
type I pneumocyte | 12 studies | 87% ± 10% | |
type II pneumocyte | 12 studies | 49% ± 18% | |
club cell | 11 studies | 50% ± 18% | |
glutamatergic neuron | 10 studies | 44% ± 24% | |
respiratory goblet cell | 8 studies | 59% ± 7% | |
secretory cell | 8 studies | 49% ± 13% | |
endothelial cell | 7 studies | 28% ± 13% | |
ionocyte | 6 studies | 33% ± 12% | |
enterocyte | 6 studies | 28% ± 5% | |
fibroblast | 6 studies | 27% ± 11% | |
cardiac muscle cell | 6 studies | 61% ± 24% | |
kidney loop of Henle epithelial cell | 5 studies | 45% ± 23% | |
GABAergic neuron | 5 studies | 42% ± 17% | |
deuterosomal cell | 4 studies | 26% ± 11% | |
duct epithelial cell | 4 studies | 33% ± 17% | |
squamous epithelial cell | 4 studies | 75% ± 11% | |
hepatocyte | 4 studies | 55% ± 17% | |
luminal cell of prostate epithelium | 4 studies | 47% ± 14% | |
goblet cell | 4 studies | 43% ± 28% | |
mucus secreting cell | 4 studies | 33% ± 11% | |
interneuron | 4 studies | 40% ± 17% | |
renal alpha-intercalated cell | 4 studies | 46% ± 22% | |
renal principal cell | 4 studies | 28% ± 5% | |
hillock cell | 3 studies | 21% ± 5% | |
microglial cell | 3 studies | 17% ± 1% | |
pancreatic ductal cell | 3 studies | 45% ± 19% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 31% ± 12% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 16150.31 | 576 / 578 | 98% | 35.67 | 1129 / 1155 |
thymus | 100% | 9723.47 | 652 / 653 | 96% | 37.00 | 583 / 605 |
kidney | 99% | 4665.48 | 88 / 89 | 91% | 16.63 | 822 / 901 |
prostate | 92% | 3488.77 | 226 / 245 | 96% | 19.40 | 484 / 502 |
liver | 97% | 3436.74 | 219 / 226 | 81% | 10.98 | 328 / 406 |
pancreas | 78% | 1952.60 | 256 / 328 | 97% | 45.44 | 173 / 178 |
stomach | 78% | 3713.58 | 280 / 359 | 97% | 35.47 | 278 / 286 |
ovary | 73% | 1819.56 | 132 / 180 | 88% | 12.11 | 379 / 430 |
esophagus | 60% | 8677.09 | 871 / 1445 | 97% | 36.21 | 178 / 183 |
intestine | 42% | 2938.39 | 409 / 966 | 99% | 40.65 | 523 / 527 |
skin | 100% | 7473.13 | 1804 / 1809 | 35% | 3.44 | 163 / 472 |
bladder | 29% | 1009.76 | 6 / 21 | 84% | 20.74 | 422 / 504 |
breast | 33% | 784.59 | 151 / 459 | 76% | 9.11 | 851 / 1118 |
ureter | 0% | 0 | 0 / 0 | 100% | 5.23 | 1 / 1 |
muscle | 100% | 11158.45 | 799 / 803 | 0% | 0 | 0 / 0 |
uterus | 15% | 384.95 | 26 / 170 | 84% | 17.83 | 385 / 459 |
heart | 95% | 13624.24 | 815 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 94% | 4717.40 | 1250 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 84% | 20.62 | 38 / 45 |
brain | 52% | 2368.44 | 1365 / 2642 | 17% | 1.50 | 117 / 705 |
lymph node | 0% | 0 | 0 / 0 | 52% | 6.68 | 15 / 29 |
peripheral blood | 19% | 958.52 | 174 / 929 | 0% | 0 | 0 / 0 |
adrenal gland | 9% | 179.31 | 24 / 258 | 8% | 0.60 | 19 / 230 |
adipose | 15% | 350.32 | 186 / 1204 | 0% | 0 | 0 / 0 |
spleen | 1% | 19.39 | 3 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0016567 | Biological process | protein ubiquitination |
GO_0023051 | Biological process | regulation of signaling |
GO_0030155 | Biological process | regulation of cell adhesion |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0000151 | Cellular component | ubiquitin ligase complex |
GO_0009986 | Cellular component | cell surface |
GO_0005829 | Cellular component | cytosol |
GO_0005925 | Cellular component | focal adhesion |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0004842 | Molecular function | ubiquitin-protein transferase activity |
GO_0046872 | Molecular function | metal ion binding |
Gene name | LMO7 |
Protein name | LIM domain 7 LIM domain only protein 7 (LMO-7) (F-box only protein 20) (LOMP) LIM domain only 7 protein |
Synonyms | KIAA0858 FBXO20 FBX20 |
Description | |
Accessions | ENST00000525373.5 H0Y424 H0YE95 ENST00000497947.6 ENST00000321797.12 E9PMJ6 Q8WWI1 E9PK58 ENST00000447038.5 ENST00000377534.8 ENST00000341547.8 [Q8WWI1-3] E9PMS6 F8J2B5 ENST00000465261.6 ENST00000533809.2 H0YDQ3 E9PMT2 A0A8V8TKQ1 ENST00000534657.5 ENST00000489941.6 U3KQE6 ENST00000526202.5 ENST00000605961.2 ENST00000525107.6 E9PMP7 ENST00000357063.7 E9PRE3 H0YDG6 ENST00000524651.5 F8WD26 J3KP06 A0A0A0MTE2 E9PJ10 ENST00000526528.1 ENST00000526371.1 E9PLU6 ENST00000525914.5 ENST00000377499.9 E9PRJ0 |