Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 39 studies | 39% ± 16% | |
pericyte | 31 studies | 35% ± 14% | |
endothelial cell | 30 studies | 32% ± 13% | |
endothelial cell of lymphatic vessel | 23 studies | 53% ± 17% | |
smooth muscle cell | 23 studies | 34% ± 12% | |
connective tissue cell | 15 studies | 38% ± 15% | |
oligodendrocyte precursor cell | 13 studies | 31% ± 15% | |
myofibroblast cell | 11 studies | 31% ± 12% | |
adipocyte | 11 studies | 65% ± 19% | |
astrocyte | 7 studies | 30% ± 10% | |
capillary endothelial cell | 7 studies | 30% ± 10% | |
mesothelial cell | 6 studies | 45% ± 23% | |
vein endothelial cell | 5 studies | 27% ± 10% | |
cardiac muscle cell | 5 studies | 28% ± 8% | |
endothelial cell of artery | 4 studies | 24% ± 8% | |
glial cell | 4 studies | 27% ± 8% | |
muscle cell | 4 studies | 33% ± 12% | |
interstitial cell of Cajal | 3 studies | 37% ± 8% | |
retinal ganglion cell | 3 studies | 27% ± 6% | |
endothelial cell of vascular tree | 3 studies | 18% ± 2% | |
adventitial cell | 3 studies | 35% ± 4% | |
Schwann cell | 3 studies | 29% ± 14% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 99% | 14317.58 | 453 / 459 | 98% | 31.23 | 1101 / 1118 |
lung | 100% | 13965.07 | 577 / 578 | 91% | 18.54 | 1055 / 1155 |
intestine | 92% | 13589.72 | 893 / 966 | 93% | 19.50 | 489 / 527 |
bladder | 95% | 12333.86 | 20 / 21 | 85% | 16.37 | 427 / 504 |
esophagus | 83% | 17452.84 | 1202 / 1445 | 95% | 23.33 | 173 / 183 |
thymus | 90% | 4959.46 | 586 / 653 | 85% | 13.67 | 516 / 605 |
skin | 73% | 17394.39 | 1324 / 1809 | 99% | 74.65 | 465 / 472 |
uterus | 99% | 16656.92 | 168 / 170 | 67% | 19.41 | 309 / 459 |
prostate | 87% | 6452.57 | 213 / 245 | 78% | 10.19 | 393 / 502 |
stomach | 58% | 6965.13 | 210 / 359 | 95% | 24.76 | 272 / 286 |
ovary | 70% | 3846.52 | 126 / 180 | 66% | 8.66 | 284 / 430 |
adipose | 100% | 22188.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
kidney | 15% | 574.35 | 13 / 89 | 84% | 36.09 | 756 / 901 |
pancreas | 1% | 40.41 | 4 / 328 | 97% | 30.06 | 172 / 178 |
brain | 4% | 152.00 | 116 / 2642 | 88% | 17.34 | 619 / 705 |
blood vessel | 90% | 7513.17 | 1199 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 12% | 436.67 | 32 / 258 | 77% | 15.56 | 178 / 230 |
eye | 0% | 0 | 0 / 0 | 83% | 8.68 | 66 / 80 |
heart | 78% | 4344.40 | 669 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 76% | 12.22 | 34 / 45 |
lymph node | 0% | 0 | 0 / 0 | 66% | 8.47 | 19 / 29 |
liver | 0% | 0 | 0 / 226 | 50% | 5.42 | 204 / 406 |
muscle | 7% | 244.60 | 53 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007155 | Biological process | cell adhesion |
GO_0030155 | Biological process | regulation of cell adhesion |
GO_0030334 | Biological process | regulation of cell migration |
GO_0045995 | Biological process | regulation of embryonic development |
GO_0120163 | Biological process | negative regulation of cold-induced thermogenesis |
GO_0005604 | Cellular component | basement membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0005102 | Molecular function | signaling receptor binding |
Gene name | LAMA4 |
Protein name | LAMA4 protein LAMA4 protein (Laminin subunit alpha 4) (Laminin, alpha 4, isoform CRA_a) Laminin subunit alpha-4 (Laminin-14 subunit alpha) (Laminin-8 subunit alpha) (Laminin-9 subunit alpha) Laminin subunit alpha 4 |
Synonyms | hCG_32955 |
Description | FUNCTION: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. |
Accessions | A0A0A0MTC7 ENST00000389463.9 Q16363 A0A494C1K8 ENST00000243219.7 H0Y351 ENST00000521398.5 ENST00000651529.1 Q6LET9 ENST00000521690.1 ENST00000521732.5 ENST00000522006.5 A0A494C139 H0YAP9 ENST00000230538.12 ENST00000431543.6 Q05CF9 ENST00000651860.1 H0YAQ5 ENST00000368640.8 ENST00000519932.5 E5RFD7 E5RK79 ENST00000368638.5 [Q16363-3] E5RFQ2 ENST00000523765.1 ENST00000424408.6 A0A0A0MQS9 Q5D044 E5RHF3 ENST00000455073.1 [Q16363-3] ENST00000453937.2 [Q16363-3] |