Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 9 studies | 23% ± 7% | |
B cell | 5 studies | 31% ± 20% | |
epithelial cell | 5 studies | 41% ± 17% | |
astrocyte | 5 studies | 21% ± 7% | |
retinal rod cell | 4 studies | 17% ± 1% | |
adipocyte | 4 studies | 19% ± 6% | |
ciliated cell | 4 studies | 29% ± 11% | |
macrophage | 4 studies | 26% ± 11% | |
pericyte | 4 studies | 26% ± 12% | |
GABAergic neuron | 4 studies | 34% ± 11% | |
glutamatergic neuron | 4 studies | 40% ± 16% | |
goblet cell | 4 studies | 26% ± 13% | |
oligodendrocyte | 4 studies | 18% ± 2% | |
CD4-positive, alpha-beta T cell | 3 studies | 19% ± 1% | |
retinal bipolar neuron | 3 studies | 23% ± 6% | |
lymphocyte | 3 studies | 20% ± 2% | |
rod bipolar cell | 3 studies | 19% ± 0% | |
CD8-positive, alpha-beta T cell | 3 studies | 20% ± 3% | |
basal cell | 3 studies | 46% ± 9% | |
dendritic cell | 3 studies | 41% ± 16% | |
endothelial cell of lymphatic vessel | 3 studies | 33% ± 17% | |
fibroblast | 3 studies | 31% ± 12% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 4% | |
abnormal cell | 3 studies | 25% ± 12% | |
transit amplifying cell | 3 studies | 28% ± 15% | |
neuron | 3 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 5002.95 | 1445 / 1445 | 100% | 33.45 | 183 / 183 |
ovary | 100% | 8112.26 | 180 / 180 | 100% | 34.36 | 430 / 430 |
breast | 100% | 6107.39 | 459 / 459 | 100% | 37.66 | 1117 / 1118 |
uterus | 100% | 7088.89 | 170 / 170 | 100% | 38.60 | 458 / 459 |
lung | 100% | 6123.55 | 578 / 578 | 100% | 34.17 | 1152 / 1155 |
intestine | 100% | 6295.91 | 966 / 966 | 100% | 28.62 | 525 / 527 |
bladder | 100% | 6459.57 | 21 / 21 | 100% | 32.32 | 502 / 504 |
prostate | 100% | 7504.19 | 245 / 245 | 99% | 26.80 | 499 / 502 |
thymus | 100% | 6639.70 | 653 / 653 | 99% | 26.31 | 597 / 605 |
pancreas | 100% | 3338.75 | 327 / 328 | 99% | 30.70 | 176 / 178 |
stomach | 100% | 5237.20 | 359 / 359 | 98% | 27.47 | 281 / 286 |
brain | 98% | 3541.31 | 2589 / 2642 | 100% | 28.64 | 705 / 705 |
skin | 100% | 5240.23 | 1809 / 1809 | 97% | 29.41 | 457 / 472 |
adrenal gland | 100% | 4978.67 | 258 / 258 | 96% | 19.04 | 221 / 230 |
kidney | 100% | 5730.29 | 89 / 89 | 93% | 20.76 | 840 / 901 |
liver | 100% | 2726.70 | 225 / 226 | 85% | 16.43 | 347 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 32.17 | 29 / 29 |
spleen | 100% | 6786.08 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 23.73 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.06 | 1 / 1 |
blood vessel | 100% | 5624.67 | 1334 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 4745.80 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 3397.08 | 800 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 3002.78 | 851 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 13.90 | 69 / 80 |
peripheral blood | 76% | 2350.38 | 707 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006376 | Biological process | mRNA splice site recognition |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | KHDC4 |
Protein name | KH homology domain-containing protein 4 (Brings lots of money 7) (Pre-mRNA splicing factor protein KHDC4) KH homology domain-containing protein 4 (Brings lots of money 7) |
Synonyms | SNORA80EHG KIAA0907 hCG_17171 BLOM7 |
Description | FUNCTION: RNA-binding protein involved in pre-mRNA splicing . Interacts with the PRP19C/Prp19 complex/NTC/Nineteen complex which is part of the spliceosome . Involved in regulating splice site selection . Binds preferentially RNA with A/C rich sequences and poly-C stretches . . |
Accessions | ENST00000368321.8 [Q7Z7F0-1] ENST00000368320.7 [Q7Z7F0-2] ENST00000368319.3 [Q7Z7F0-3] A0A0S2Z5B9 Q7Z7F0 A0A0S2Z5A4 |