Name | Number of supported studies | Average coverage | |
---|---|---|---|
oligodendrocyte precursor cell | 14 studies | 85% ± 11% | |
astrocyte | 12 studies | 47% ± 21% | |
glutamatergic neuron | 12 studies | 72% ± 19% | |
GABAergic neuron | 11 studies | 61% ± 22% | |
neuron | 6 studies | 40% ± 16% | |
interneuron | 5 studies | 64% ± 24% | |
endothelial cell | 4 studies | 51% ± 17% | |
granule cell | 4 studies | 84% ± 8% | |
microglial cell | 4 studies | 40% ± 12% | |
macrophage | 3 studies | 26% ± 11% | |
differentiation-committed oligodendrocyte precursor | 3 studies | 63% ± 2% | |
GABAergic interneuron | 3 studies | 73% ± 11% | |
progenitor cell | 3 studies | 34% ± 6% | |
retinal ganglion cell | 3 studies | 36% ± 10% | |
adipocyte | 3 studies | 28% ± 2% | |
oligodendrocyte | 3 studies | 42% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 99% | 2333.10 | 2619 / 2642 | 97% | 38.94 | 684 / 705 |
ovary | 97% | 472.61 | 175 / 180 | 92% | 5.62 | 396 / 430 |
breast | 71% | 183.74 | 326 / 459 | 77% | 5.32 | 866 / 1118 |
uterus | 86% | 225.43 | 146 / 170 | 22% | 0.84 | 103 / 459 |
pancreas | 2% | 3.06 | 8 / 328 | 80% | 3.01 | 143 / 178 |
adipose | 63% | 152.15 | 757 / 1204 | 0% | 0 | 0 / 0 |
adrenal gland | 22% | 54.10 | 57 / 258 | 39% | 3.16 | 89 / 230 |
esophagus | 21% | 37.40 | 298 / 1445 | 37% | 1.06 | 68 / 183 |
lung | 7% | 12.55 | 42 / 578 | 50% | 1.53 | 579 / 1155 |
bladder | 14% | 26.48 | 3 / 21 | 42% | 1.39 | 211 / 504 |
thymus | 43% | 69.17 | 278 / 653 | 4% | 0.08 | 22 / 605 |
skin | 28% | 92.14 | 509 / 1809 | 6% | 0.42 | 26 / 472 |
intestine | 17% | 24.33 | 161 / 966 | 10% | 0.37 | 54 / 527 |
stomach | 4% | 5.51 | 14 / 359 | 17% | 0.33 | 48 / 286 |
peripheral blood | 17% | 141.34 | 160 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 13% | 0.27 | 6 / 45 |
blood vessel | 10% | 14.86 | 129 / 1335 | 0% | 0 | 0 / 0 |
prostate | 2% | 2.45 | 4 / 245 | 8% | 0.21 | 40 / 502 |
kidney | 0% | 0 | 0 / 89 | 9% | 0.41 | 79 / 901 |
liver | 0% | 0 | 0 / 226 | 8% | 0.22 | 31 / 406 |
muscle | 4% | 4.64 | 29 / 803 | 0% | 0 | 0 / 0 |
heart | 0% | 0.44 | 3 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0019233 | Biological process | sensory perception of pain |
GO_0051260 | Biological process | protein homooligomerization |
GO_0045475 | Biological process | locomotor rhythm |
GO_0006936 | Biological process | muscle contraction |
GO_0071805 | Biological process | potassium ion transmembrane transport |
GO_0007268 | Biological process | chemical synaptic transmission |
GO_0019228 | Biological process | neuronal action potential |
GO_0060078 | Biological process | regulation of postsynaptic membrane potential |
GO_0001508 | Biological process | action potential |
GO_0086009 | Biological process | membrane repolarization |
GO_0008016 | Biological process | regulation of heart contraction |
GO_0071456 | Biological process | cellular response to hypoxia |
GO_0098978 | Cellular component | glutamatergic synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0043197 | Cellular component | dendritic spine |
GO_0043204 | Cellular component | perikaryon |
GO_0043025 | Cellular component | neuronal cell body |
GO_0032809 | Cellular component | neuronal cell body membrane |
GO_0098982 | Cellular component | GABA-ergic synapse |
GO_0044853 | Cellular component | plasma membrane raft |
GO_0070161 | Cellular component | anchoring junction |
GO_0045211 | Cellular component | postsynaptic membrane |
GO_0099634 | Cellular component | postsynaptic specialization membrane |
GO_0008076 | Cellular component | voltage-gated potassium channel complex |
GO_0071193 | Cellular component | Kv4.2-KChIP2 channel complex |
GO_0005250 | Molecular function | A-type (transient outward) potassium channel activity |
GO_0005249 | Molecular function | voltage-gated potassium channel activity |
GO_1905030 | Molecular function | voltage-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | KCND2 |
Protein name | Potassium voltage-gated channel subfamily D member 2 Potassium voltage-gated channel subfamily D member 2 (Voltage-gated potassium channel subunit Kv4.2) |
Synonyms | KIAA1044 tcag7.101 hCG_2039708 |
Description | FUNCTION: Voltage-gated potassium channel that mediates transmembrane potassium transport in excitable membranes, primarily in the brain. Mediates the major part of the dendritic A-type current I(SA) in brain neurons (By similarity). This current is activated at membrane potentials that are below the threshold for action potentials. It regulates neuronal excitability, prolongs the latency before the first spike in a series of action potentials, regulates the frequency of repetitive action potential firing, shortens the duration of action potentials and regulates the back-propagation of action potentials from the neuronal cell body to the dendrites. Contributes to the regulation of the circadian rhythm of action potential firing in suprachiasmatic nucleus neurons, which regulates the circadian rhythm of locomotor activity (By similarity). Functions downstream of the metabotropic glutamate receptor GRM5 and plays a role in neuronal excitability and in nociception mediated by activation of GRM5 (By similarity). Mediates the transient outward current I(to) in rodent heart left ventricle apex cells, but not in human heart, where this current is mediated by another family member. Forms tetrameric potassium-selective channels through which potassium ions pass in accordance with their electrochemical gradient . The channel alternates between opened and closed conformations in response to the voltage difference across the membrane . Can form functional homotetrameric channels and heterotetrameric channels that contain variable proportions of KCND2 and KCND3; channel properties depend on the type of pore-forming alpha subunits that are part of the channel. In vivo, membranes probably contain a mixture of heteromeric potassium channel complexes. Interaction with specific isoforms of the regulatory subunits KCNIP1, KCNIP2, KCNIP3 or KCNIP4 strongly increases expression at the cell surface and thereby increases channel activity; it modulates the kinetics of channel activation and inactivation, shifts the threshold for channel activation to more negative voltage values, shifts the threshold for inactivation to less negative voltages and accelerates recovery after inactivation . Likewise, interaction with DPP6 or DPP10 promotes expression at the cell membrane and regulates both channel characteristics and activity (By similarity). . |
Accessions | Q75LS7 ENST00000425288.1 A4D0V9 Q9NZV8 ENST00000331113.9 H7C445 |