Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 10 studies | 23% ± 6% | |
ciliated cell | 10 studies | 24% ± 8% | |
glutamatergic neuron | 6 studies | 45% ± 27% | |
microglial cell | 6 studies | 28% ± 7% | |
GABAergic neuron | 6 studies | 38% ± 20% | |
astrocyte | 6 studies | 32% ± 10% | |
oligodendrocyte | 6 studies | 24% ± 6% | |
B cell | 5 studies | 21% ± 6% | |
fibroblast | 5 studies | 19% ± 4% | |
macrophage | 5 studies | 28% ± 6% | |
plasma cell | 4 studies | 33% ± 6% | |
epithelial cell | 4 studies | 33% ± 7% | |
adipocyte | 4 studies | 18% ± 3% | |
oligodendrocyte precursor cell | 4 studies | 31% ± 7% | |
endothelial cell of lymphatic vessel | 4 studies | 20% ± 3% | |
dendritic cell | 3 studies | 18% ± 1% | |
club cell | 3 studies | 21% ± 8% | |
monocyte | 3 studies | 20% ± 2% | |
naive B cell | 3 studies | 16% ± 1% | |
basal cell | 3 studies | 31% ± 14% | |
transit amplifying cell | 3 studies | 34% ± 21% | |
interneuron | 3 studies | 48% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1281.21 | 1445 / 1445 | 100% | 26.45 | 183 / 183 |
lung | 100% | 1557.71 | 578 / 578 | 100% | 33.96 | 1155 / 1155 |
ovary | 100% | 2066.62 | 180 / 180 | 100% | 25.85 | 430 / 430 |
breast | 100% | 1672.78 | 459 / 459 | 100% | 30.48 | 1117 / 1118 |
uterus | 100% | 1848.31 | 170 / 170 | 100% | 39.65 | 458 / 459 |
bladder | 100% | 1711.76 | 21 / 21 | 100% | 30.95 | 502 / 504 |
prostate | 100% | 2027.70 | 245 / 245 | 100% | 27.66 | 500 / 502 |
intestine | 100% | 1531.55 | 966 / 966 | 99% | 27.60 | 523 / 527 |
thymus | 100% | 1422.46 | 653 / 653 | 99% | 24.12 | 600 / 605 |
brain | 99% | 948.40 | 2617 / 2642 | 100% | 23.99 | 705 / 705 |
pancreas | 100% | 1287.66 | 328 / 328 | 99% | 23.25 | 176 / 178 |
stomach | 100% | 1012.31 | 359 / 359 | 99% | 26.57 | 282 / 286 |
kidney | 100% | 1151.82 | 89 / 89 | 97% | 18.94 | 877 / 901 |
skin | 100% | 1485.08 | 1809 / 1809 | 92% | 20.49 | 433 / 472 |
adrenal gland | 100% | 984.06 | 258 / 258 | 90% | 11.72 | 206 / 230 |
liver | 100% | 586.20 | 226 / 226 | 73% | 8.82 | 297 / 406 |
adipose | 100% | 1423.42 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1506.30 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 41.56 | 29 / 29 |
spleen | 100% | 2285.10 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.24 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 9.31 | 1 / 1 |
muscle | 99% | 803.04 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 697.67 | 841 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 88% | 1448.73 | 822 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 59% | 6.51 | 47 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0048496 | Biological process | maintenance of animal organ identity |
GO_0045494 | Biological process | photoreceptor cell maintenance |
GO_0061824 | Biological process | cytosolic ciliogenesis |
GO_0032391 | Cellular component | photoreceptor connecting cilium |
GO_0072686 | Cellular component | mitotic spindle |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0005813 | Cellular component | centrosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0045171 | Cellular component | intercellular bridge |
GO_0005814 | Cellular component | centriole |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0015630 | Cellular component | microtubule cytoskeleton |
GO_0019899 | Molecular function | enzyme binding |
GO_0030674 | Molecular function | protein-macromolecule adaptor activity |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
GO_0062063 | Molecular function | BBSome binding |
Gene name | IQCB1 |
Protein name | IQ motif containing B1 IQ calmodulin-binding motif-containing protein 1 (Nephrocystin-5) (p53 and DNA damage-regulated IQ motif protein) (PIQ) |
Synonyms | NPHP5 KIAA0036 OK/SW-cl.85 |
Description | FUNCTION: Involved in ciliogenesis. The function in an early step in cilia formation depends on its association with CEP290/NPHP6 . Involved in regulation of the BBSome complex integrity, specifically for presence of BBS2 and BBS5 in the complex, and in ciliary targeting of selected BBSome cargos. May play a role in controlling entry of the BBSome complex to cilia possibly implicating CEP290/NPHP6 . . |
Accessions | ENST00000393650.7 [Q15051-3] ENST00000462442.1 C9JXD7 C9J6Z7 ENST00000460108.5 Q15051 ENST00000349820.10 [Q15051-2] C9JVC4 ENST00000310864.11 [Q15051-1] ENST00000498104.1 |