Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 42% ± 15% | |
astrocyte | 16 studies | 32% ± 15% | |
endothelial cell | 11 studies | 25% ± 10% | |
oligodendrocyte | 11 studies | 31% ± 11% | |
retinal rod cell | 8 studies | 34% ± 18% | |
GABAergic neuron | 7 studies | 38% ± 20% | |
macrophage | 6 studies | 23% ± 4% | |
retinal cone cell | 6 studies | 38% ± 11% | |
epithelial cell | 5 studies | 28% ± 3% | |
endothelial cell of lymphatic vessel | 5 studies | 21% ± 3% | |
oligodendrocyte precursor cell | 5 studies | 28% ± 9% | |
fibroblast | 5 studies | 24% ± 10% | |
interneuron | 5 studies | 38% ± 23% | |
microglial cell | 4 studies | 25% ± 12% | |
glutamatergic neuron | 4 studies | 54% ± 16% | |
neuron | 3 studies | 34% ± 13% | |
Mueller cell | 3 studies | 31% ± 15% | |
retina horizontal cell | 3 studies | 29% ± 13% | |
hepatocyte | 3 studies | 51% ± 22% | |
ependymal cell | 3 studies | 62% ± 11% | |
type I pneumocyte | 3 studies | 21% ± 6% | |
transit amplifying cell | 3 studies | 25% ± 13% | |
adipocyte | 3 studies | 19% ± 1% | |
smooth muscle cell | 3 studies | 16% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 931.49 | 2641 / 2642 | 100% | 11.60 | 704 / 705 |
prostate | 100% | 900.31 | 245 / 245 | 100% | 8.92 | 501 / 502 |
thymus | 100% | 1864.35 | 653 / 653 | 100% | 13.59 | 603 / 605 |
breast | 100% | 904.70 | 459 / 459 | 99% | 11.87 | 1110 / 1118 |
intestine | 100% | 971.31 | 966 / 966 | 98% | 9.38 | 519 / 527 |
stomach | 100% | 629.79 | 358 / 359 | 98% | 8.65 | 281 / 286 |
lung | 100% | 871.05 | 576 / 578 | 98% | 6.00 | 1133 / 1155 |
liver | 100% | 921.79 | 226 / 226 | 97% | 6.28 | 394 / 406 |
adrenal gland | 100% | 1035.35 | 258 / 258 | 97% | 7.87 | 223 / 230 |
bladder | 100% | 910.38 | 21 / 21 | 97% | 6.63 | 488 / 504 |
kidney | 100% | 1346.73 | 89 / 89 | 96% | 12.88 | 867 / 901 |
esophagus | 99% | 714.75 | 1434 / 1445 | 97% | 6.47 | 177 / 183 |
pancreas | 96% | 488.18 | 316 / 328 | 99% | 7.68 | 176 / 178 |
uterus | 100% | 1319.41 | 170 / 170 | 94% | 6.25 | 430 / 459 |
ovary | 100% | 1426.80 | 180 / 180 | 93% | 4.88 | 401 / 430 |
skin | 100% | 624.10 | 1803 / 1809 | 93% | 9.29 | 440 / 472 |
spleen | 100% | 796.24 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.35 | 1 / 1 |
blood vessel | 100% | 732.46 | 1333 / 1335 | 0% | 0 | 0 / 0 |
adipose | 100% | 780.33 | 1202 / 1204 | 0% | 0 | 0 / 0 |
muscle | 99% | 602.13 | 791 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 4.00 | 28 / 29 |
heart | 94% | 488.32 | 808 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 89% | 6.99 | 71 / 80 |
tonsil | 0% | 0 | 0 / 0 | 87% | 4.03 | 39 / 45 |
peripheral blood | 42% | 169.71 | 394 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0001822 | Biological process | kidney development |
GO_0060122 | Biological process | inner ear receptor cell stereocilium organization |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0045724 | Biological process | positive regulation of cilium assembly |
GO_2000785 | Biological process | regulation of autophagosome assembly |
GO_0035720 | Biological process | intraciliary anterograde transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0034021 | Biological process | response to silicon dioxide |
GO_0036126 | Cellular component | sperm flagellum |
GO_0005813 | Cellular component | centrosome |
GO_0031514 | Cellular component | motile cilium |
GO_0002177 | Cellular component | manchette |
GO_0030992 | Cellular component | intraciliary transport particle B |
GO_0120212 | Cellular component | sperm head-tail coupling apparatus |
GO_0005814 | Cellular component | centriole |
GO_0097542 | Cellular component | ciliary tip |
GO_0097730 | Cellular component | non-motile cilium |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0097546 | Cellular component | ciliary base |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005515 | Molecular function | protein binding |
GO_0019894 | Molecular function | kinesin binding |
Gene name | IFT88 |
Protein name | Intraflagellar transport protein 88 homolog (Recessive polycystic kidney disease protein Tg737 homolog) (Tetratricopeptide repeat protein 10) (TPR repeat protein 10) Intraflagellar transport 88 Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY |
Synonyms | TTC10 TG737 |
Description | FUNCTION: Positively regulates primary cilium biogenesis . Also involved in autophagy since it is required for trafficking of ATG16L and the expansion of the autophagic compartment. . |
Accessions | ENST00000537103.2 F6SRW8 F5H6C2 Q13099 ENST00000389373.3 ENST00000351808.10 [Q13099-2] ENST00000319980.10 [Q13099-1] |