Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 53% ± 20% | |
endothelial cell | 4 studies | 23% ± 9% | |
epithelial cell | 4 studies | 34% ± 9% | |
deuterosomal cell | 3 studies | 27% ± 1% | |
retina horizontal cell | 3 studies | 27% ± 13% | |
fibroblast | 3 studies | 22% ± 4% | |
astrocyte | 3 studies | 28% ± 7% | |
dendritic cell | 3 studies | 21% ± 2% | |
goblet cell | 3 studies | 22% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1230.74 | 2642 / 2642 | 100% | 11.46 | 705 / 705 |
prostate | 100% | 1076.55 | 245 / 245 | 100% | 9.71 | 502 / 502 |
thymus | 100% | 1289.36 | 653 / 653 | 100% | 9.16 | 604 / 605 |
adrenal gland | 100% | 1153.24 | 258 / 258 | 99% | 7.61 | 228 / 230 |
kidney | 100% | 992.67 | 89 / 89 | 99% | 6.84 | 890 / 901 |
pancreas | 100% | 493.81 | 327 / 328 | 99% | 7.07 | 176 / 178 |
ovary | 100% | 1016.24 | 180 / 180 | 98% | 5.93 | 421 / 430 |
intestine | 100% | 959.69 | 966 / 966 | 98% | 5.10 | 515 / 527 |
breast | 100% | 794.97 | 459 / 459 | 98% | 7.39 | 1091 / 1118 |
bladder | 100% | 913.38 | 21 / 21 | 97% | 7.42 | 489 / 504 |
lung | 99% | 769.03 | 572 / 578 | 97% | 7.27 | 1119 / 1155 |
liver | 100% | 545.22 | 226 / 226 | 96% | 5.38 | 389 / 406 |
uterus | 100% | 1012.54 | 170 / 170 | 96% | 7.61 | 439 / 459 |
skin | 100% | 767.24 | 1808 / 1809 | 93% | 7.09 | 441 / 472 |
stomach | 100% | 738.67 | 359 / 359 | 93% | 4.54 | 267 / 286 |
esophagus | 100% | 752.59 | 1445 / 1445 | 91% | 4.95 | 167 / 183 |
eye | 0% | 0 | 0 / 0 | 100% | 7.68 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 6.99 | 29 / 29 |
spleen | 100% | 832.67 | 241 / 241 | 0% | 0 | 0 / 0 |
adipose | 100% | 690.27 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 649.49 | 1327 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 802.63 | 848 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 96% | 5.91 | 43 / 45 |
muscle | 93% | 356.29 | 746 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 81% | 332.29 | 751 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0060271 | Biological process | cilium assembly |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_0007283 | Biological process | spermatogenesis |
GO_0001822 | Biological process | kidney development |
GO_0006886 | Biological process | intracellular protein transport |
GO_0060122 | Biological process | inner ear receptor cell stereocilium organization |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0090102 | Biological process | cochlea development |
GO_0035720 | Biological process | intraciliary anterograde transport |
GO_0042073 | Biological process | intraciliary transport |
GO_0036126 | Cellular component | sperm flagellum |
GO_0005813 | Cellular component | centrosome |
GO_0031514 | Cellular component | motile cilium |
GO_0030992 | Cellular component | intraciliary transport particle B |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0097542 | Cellular component | ciliary tip |
GO_0000139 | Cellular component | Golgi membrane |
GO_0097228 | Cellular component | sperm principal piece |
GO_0005929 | Cellular component | cilium |
GO_0005737 | Cellular component | cytoplasm |
GO_0097225 | Cellular component | sperm midpiece |
GO_0005634 | Cellular component | nucleus |
GO_0005525 | Molecular function | GTP binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | IFT27 |
Protein name | Intraflagellar transport protein 27 homolog (Putative GTP-binding protein RAY-like) (Rab-like protein 4) Intraflagellar transport 27 |
Synonyms | RAYL RABL4 |
Description | FUNCTION: Small GTPase-like component of the intraflagellar transport (IFT) complex B that promotes the exit of the BBSome complex from cilia via its interaction with ARL6 . Not involved in entry of the BBSome complex into cilium. Prevents aggregation of GTP-free ARL6 . Required for hedgehog signaling. Forms a subcomplex within the IFT complex B with IFT25. Its role in intraflagellar transport is mainly seen in tissues rich in ciliated cells such as kidney and testis. Essential for male fertility, spermiogenesis and sperm flagella formation. Plays a role in the early development of the kidney. May be involved in the regulation of ureteric bud initiation (By similarity). . |
Accessions | ENST00000440696.2 H0Y6C7 ENST00000415653.5 B1AH56 ENST00000430701.5 Q9BW83 B1AH58 ENST00000433985.7 [Q9BW83-1] ENST00000417951.6 F5GZ09 ENST00000340630.9 [Q9BW83-2] |