Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 16 studies | 26% ± 10% | |
macrophage | 15 studies | 28% ± 12% | |
microglial cell | 11 studies | 30% ± 13% | |
fibroblast | 11 studies | 21% ± 5% | |
astrocyte | 10 studies | 31% ± 13% | |
oligodendrocyte | 10 studies | 26% ± 10% | |
glutamatergic neuron | 9 studies | 42% ± 26% | |
oligodendrocyte precursor cell | 9 studies | 37% ± 16% | |
GABAergic neuron | 8 studies | 39% ± 21% | |
B cell | 6 studies | 17% ± 2% | |
interneuron | 6 studies | 37% ± 21% | |
neuron | 6 studies | 34% ± 15% | |
myeloid cell | 6 studies | 29% ± 10% | |
mast cell | 6 studies | 23% ± 7% | |
retina horizontal cell | 6 studies | 30% ± 8% | |
dendritic cell | 6 studies | 27% ± 11% | |
pericyte | 6 studies | 20% ± 6% | |
classical monocyte | 5 studies | 24% ± 6% | |
non-classical monocyte | 5 studies | 21% ± 8% | |
amacrine cell | 5 studies | 21% ± 5% | |
epithelial cell | 5 studies | 36% ± 13% | |
adipocyte | 5 studies | 21% ± 5% | |
cardiac muscle cell | 5 studies | 20% ± 2% | |
endothelial cell of lymphatic vessel | 5 studies | 22% ± 6% | |
monocyte | 5 studies | 24% ± 4% | |
smooth muscle cell | 5 studies | 20% ± 2% | |
natural killer cell | 4 studies | 18% ± 2% | |
myofibroblast cell | 4 studies | 24% ± 8% | |
retinal rod cell | 4 studies | 19% ± 3% | |
T cell | 3 studies | 16% ± 1% | |
capillary endothelial cell | 3 studies | 17% ± 2% | |
retinal bipolar neuron | 3 studies | 22% ± 2% | |
GABAergic interneuron | 3 studies | 21% ± 6% | |
granule cell | 3 studies | 22% ± 4% | |
retinal ganglion cell | 3 studies | 21% ± 1% | |
retinal cone cell | 3 studies | 26% ± 3% | |
mononuclear phagocyte | 3 studies | 24% ± 6% | |
ciliated cell | 3 studies | 23% ± 5% | |
lymphocyte | 3 studies | 25% ± 1% | |
basal cell | 3 studies | 26% ± 12% | |
alveolar macrophage | 3 studies | 29% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 3588.25 | 1445 / 1445 | 100% | 6.75 | 183 / 183 |
prostate | 100% | 3868.55 | 245 / 245 | 100% | 5.79 | 502 / 502 |
lung | 100% | 3896.87 | 578 / 578 | 100% | 5.49 | 1154 / 1155 |
breast | 100% | 3340.80 | 459 / 459 | 100% | 6.80 | 1116 / 1118 |
brain | 100% | 2434.16 | 2634 / 2642 | 100% | 9.46 | 705 / 705 |
intestine | 100% | 3896.69 | 966 / 966 | 100% | 4.33 | 525 / 527 |
bladder | 100% | 3630.81 | 21 / 21 | 99% | 4.39 | 501 / 504 |
stomach | 100% | 2419.41 | 359 / 359 | 99% | 4.79 | 284 / 286 |
thymus | 100% | 3162.88 | 653 / 653 | 99% | 4.73 | 599 / 605 |
uterus | 100% | 4138.89 | 170 / 170 | 99% | 4.74 | 454 / 459 |
kidney | 100% | 2468.02 | 89 / 89 | 99% | 5.43 | 891 / 901 |
pancreas | 100% | 1681.26 | 327 / 328 | 99% | 4.96 | 176 / 178 |
ovary | 100% | 3468.93 | 180 / 180 | 98% | 3.53 | 421 / 430 |
skin | 100% | 3341.17 | 1809 / 1809 | 97% | 6.95 | 460 / 472 |
adrenal gland | 100% | 2484.99 | 258 / 258 | 96% | 4.10 | 220 / 230 |
liver | 98% | 1028.80 | 221 / 226 | 70% | 1.67 | 283 / 406 |
adipose | 100% | 3291.09 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 3440.51 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 4.70 | 29 / 29 |
muscle | 100% | 3279.24 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 3359.16 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 4.78 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.76 | 1 / 1 |
heart | 98% | 2635.58 | 846 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 94% | 3.72 | 75 / 80 |
peripheral blood | 91% | 2810.84 | 850 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | GPATCH2L |
Protein name | G patch domain-containing protein 2-like G-patch domain containing 2 like |
Synonyms | C14orf118 KIAA1152 |
Description | |
Accessions | G3V3M4 ENST00000554375.5 ENST00000557542.5 ENST00000556109.1 ENST00000621494.1 [Q9NWQ4-4] ENST00000261530.12 [Q9NWQ4-3] G3V553 ENST00000556663.5 [Q9NWQ4-1] Q9NWQ4 G3V4L1 ENST00000553588.1 ENST00000557263.5 [Q9NWQ4-1] G3V4I8 ENST00000554799.1 ENST00000556372.2 G3V290 ENST00000312858.9 [Q9NWQ4-4] G3V5D0 |