Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 34 studies | 27% ± 10% | |
pericyte | 21 studies | 25% ± 9% | |
endothelial cell | 19 studies | 27% ± 12% | |
astrocyte | 19 studies | 38% ± 17% | |
smooth muscle cell | 17 studies | 24% ± 6% | |
macrophage | 14 studies | 24% ± 6% | |
oligodendrocyte precursor cell | 13 studies | 34% ± 19% | |
myofibroblast cell | 12 studies | 29% ± 10% | |
connective tissue cell | 9 studies | 31% ± 12% | |
epithelial cell | 9 studies | 36% ± 17% | |
endothelial cell of artery | 7 studies | 19% ± 4% | |
progenitor cell | 6 studies | 21% ± 3% | |
goblet cell | 6 studies | 27% ± 9% | |
GABAergic neuron | 5 studies | 30% ± 11% | |
podocyte | 5 studies | 53% ± 15% | |
enterocyte | 5 studies | 26% ± 4% | |
intestinal crypt stem cell | 5 studies | 25% ± 6% | |
mesothelial cell | 5 studies | 43% ± 22% | |
transit amplifying cell | 5 studies | 28% ± 10% | |
cardiac muscle cell | 5 studies | 21% ± 2% | |
Mueller cell | 5 studies | 56% ± 16% | |
hepatocyte | 5 studies | 36% ± 14% | |
type II pneumocyte | 5 studies | 24% ± 8% | |
oligodendrocyte | 5 studies | 27% ± 5% | |
CD16-negative, CD56-bright natural killer cell, human | 4 studies | 18% ± 3% | |
capillary endothelial cell | 4 studies | 18% ± 4% | |
abnormal cell | 4 studies | 28% ± 7% | |
microglial cell | 4 studies | 22% ± 5% | |
retinal cone cell | 4 studies | 26% ± 8% | |
retinal rod cell | 4 studies | 17% ± 1% | |
myeloid cell | 4 studies | 20% ± 5% | |
endothelial cell of vascular tree | 4 studies | 19% ± 3% | |
glutamatergic neuron | 4 studies | 27% ± 4% | |
dendritic cell | 4 studies | 23% ± 6% | |
brush cell | 4 studies | 19% ± 2% | |
basal cell | 4 studies | 24% ± 5% | |
neuron | 4 studies | 33% ± 15% | |
conventional dendritic cell | 3 studies | 23% ± 7% | |
ciliated cell | 3 studies | 21% ± 4% | |
ependymal cell | 3 studies | 38% ± 18% | |
enteroendocrine cell | 3 studies | 28% ± 9% | |
chondrocyte | 3 studies | 37% ± 10% | |
interneuron | 3 studies | 19% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
intestine | 100% | 4322.26 | 966 / 966 | 99% | 110.49 | 523 / 527 |
stomach | 100% | 2930.66 | 359 / 359 | 99% | 99.36 | 283 / 286 |
lung | 100% | 3546.33 | 578 / 578 | 98% | 76.81 | 1137 / 1155 |
brain | 98% | 3321.98 | 2597 / 2642 | 100% | 165.19 | 703 / 705 |
esophagus | 99% | 2437.50 | 1431 / 1445 | 97% | 71.09 | 177 / 183 |
breast | 100% | 2709.64 | 459 / 459 | 95% | 46.61 | 1059 / 1118 |
kidney | 100% | 2488.81 | 89 / 89 | 93% | 60.03 | 842 / 901 |
pancreas | 95% | 1305.38 | 313 / 328 | 97% | 53.90 | 172 / 178 |
uterus | 100% | 3719.23 | 170 / 170 | 91% | 59.21 | 418 / 459 |
prostate | 100% | 1873.58 | 244 / 245 | 90% | 35.01 | 454 / 502 |
bladder | 100% | 2729.95 | 21 / 21 | 90% | 53.92 | 452 / 504 |
thymus | 100% | 3139.88 | 653 / 653 | 89% | 36.84 | 537 / 605 |
liver | 100% | 3589.06 | 226 / 226 | 88% | 41.75 | 357 / 406 |
skin | 99% | 3015.24 | 1793 / 1809 | 87% | 45.41 | 412 / 472 |
ovary | 100% | 2552.34 | 180 / 180 | 80% | 25.33 | 346 / 430 |
adrenal gland | 97% | 1387.03 | 251 / 258 | 78% | 28.20 | 179 / 230 |
adipose | 100% | 3083.08 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4203.30 | 1335 / 1335 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 15.03 | 1 / 1 |
spleen | 100% | 1890.86 | 240 / 241 | 0% | 0 | 0 / 0 |
muscle | 99% | 1740.11 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 3721.78 | 855 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 89% | 50.57 | 40 / 45 |
lymph node | 0% | 0 | 0 / 0 | 52% | 13.28 | 15 / 29 |
eye | 0% | 0 | 0 / 0 | 31% | 7.26 | 25 / 80 |
peripheral blood | 20% | 609.52 | 188 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0005796 | Cellular component | Golgi lumen |
GO_0010008 | Cellular component | endosome membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005801 | Cellular component | cis-Golgi network |
GO_0032580 | Cellular component | Golgi cisterna membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0030139 | Cellular component | endocytic vesicle |
GO_0016020 | Cellular component | membrane |
GO_0030133 | Cellular component | transport vesicle |
Gene name | GOLIM4 |
Protein name | Golgi integral membrane protein 4 (Golgi integral membrane protein, cis) (GIMPc) (Golgi phosphoprotein 4) (Golgi-localized phosphoprotein of 130 kDa) (Golgi phosphoprotein of 130 kDa) Golgi integral membrane protein 4 |
Synonyms | GPP130 GOLPH4 GIMPC |
Description | FUNCTION: Plays a role in endosome to Golgi protein trafficking; mediates protein transport along the late endosome-bypass pathway from the early endosome to the Golgi. . |
Accessions | ENST00000309027.4 O00461 F8W785 ENST00000470487.6 |