Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal rod cell | 9 studies | 78% ± 17% | |
retinal cone cell | 4 studies | 26% ± 6% | |
amacrine cell | 3 studies | 28% ± 12% | |
retinal bipolar neuron | 3 studies | 35% ± 4% | |
microglial cell | 3 studies | 36% ± 7% | |
Mueller cell | 3 studies | 32% ± 12% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
eye | 7 studies | 50% ± 20% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 97% | 17.13 | 220 / 226 | 13% | 0.24 | 53 / 406 |
brain | 84% | 6.63 | 2230 / 2642 | 2% | 0.04 | 13 / 705 |
lung | 66% | 10.25 | 379 / 578 | 1% | 0.02 | 10 / 1155 |
spleen | 59% | 3.18 | 141 / 241 | 0% | 0 | 0 / 0 |
skin | 51% | 7.95 | 927 / 1809 | 0% | 0 | 0 / 472 |
kidney | 49% | 2.52 | 44 / 89 | 0% | 0.00 | 1 / 901 |
prostate | 49% | 2.35 | 120 / 245 | 0% | 0 | 0 / 502 |
stomach | 45% | 1.90 | 163 / 359 | 1% | 0.02 | 3 / 286 |
esophagus | 46% | 3.22 | 659 / 1445 | 1% | 0.01 | 1 / 183 |
adipose | 45% | 7.78 | 544 / 1204 | 0% | 0 | 0 / 0 |
breast | 45% | 2.59 | 205 / 459 | 0% | 0.00 | 1 / 1118 |
bladder | 43% | 1.38 | 9 / 21 | 1% | 0.02 | 6 / 504 |
blood vessel | 37% | 1.52 | 494 / 1335 | 0% | 0 | 0 / 0 |
thymus | 35% | 1.70 | 229 / 653 | 0% | 0 | 0 / 605 |
muscle | 34% | 1.26 | 272 / 803 | 0% | 0 | 0 / 0 |
ovary | 33% | 1.33 | 59 / 180 | 0% | 0.01 | 2 / 430 |
adrenal gland | 29% | 1.53 | 76 / 258 | 0% | 0 | 0 / 230 |
pancreas | 28% | 0.74 | 92 / 328 | 1% | 0.02 | 2 / 178 |
uterus | 26% | 0.89 | 44 / 170 | 1% | 0.17 | 4 / 459 |
intestine | 26% | 0.90 | 247 / 966 | 0% | 0.00 | 1 / 527 |
heart | 19% | 0.66 | 165 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 18% | 0.52 | 165 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 15% | 22.71 | 12 / 80 |
tonsil | 0% | 0 | 0 / 0 | 2% | 0.15 | 1 / 45 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007601 | Biological process | visual perception |
GO_0016056 | Biological process | G protein-coupled opsin signaling pathway |
GO_0097719 | Biological process | neural tissue regeneration |
GO_0050917 | Biological process | sensory perception of umami taste |
GO_0007188 | Biological process | adenylate cyclase-modulating G protein-coupled receptor signaling pathway |
GO_0008283 | Biological process | cell population proliferation |
GO_0014046 | Biological process | dopamine secretion |
GO_0042670 | Biological process | retinal cone cell differentiation |
GO_0060221 | Biological process | retinal rod cell differentiation |
GO_0051344 | Biological process | negative regulation of cyclic-nucleotide phosphodiesterase activity |
GO_0007165 | Biological process | signal transduction |
GO_0014070 | Biological process | response to organic cyclic compound |
GO_0120302 | Biological process | background adaptation |
GO_0042462 | Biological process | eye photoreceptor cell development |
GO_0050908 | Biological process | detection of light stimulus involved in visual perception |
GO_0007603 | Biological process | phototransduction, visible light |
GO_0022400 | Biological process | regulation of opsin-mediated signaling pathway |
GO_0009416 | Biological process | response to light stimulus |
GO_0071257 | Biological process | cellular response to electrical stimulus |
GO_0001580 | Biological process | detection of chemical stimulus involved in sensory perception of bitter taste |
GO_0007632 | Biological process | visual behavior |
GO_0016324 | Cellular component | apical plasma membrane |
GO_0032391 | Cellular component | photoreceptor connecting cilium |
GO_0005886 | Cellular component | plasma membrane |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0016020 | Cellular component | membrane |
GO_0001917 | Cellular component | photoreceptor inner segment |
GO_0043025 | Cellular component | neuronal cell body |
GO_0042622 | Cellular component | photoreceptor outer segment membrane |
GO_0097381 | Cellular component | photoreceptor disc membrane |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005834 | Cellular component | heterotrimeric G-protein complex |
GO_0019003 | Molecular function | GDP binding |
GO_0031683 | Molecular function | G-protein beta/gamma-subunit complex binding |
GO_0019901 | Molecular function | protein kinase binding |
GO_0001664 | Molecular function | G protein-coupled receptor binding |
GO_0005525 | Molecular function | GTP binding |
GO_0000035 | Molecular function | acyl binding |
GO_0046872 | Molecular function | metal ion binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | GNAT1 |
Protein name | Guanine nucleotide-binding protein G(t) subunit alpha-1 (Transducin alpha-1 chain) G protein subunit alpha transducin 1 |
Synonyms | GNATR |
Description | FUNCTION: Functions as a signal transducer for the rod photoreceptor RHO. Required for normal RHO-mediated light perception by the retina . Guanine nucleotide-binding proteins (G proteins) function as transducers downstream of G protein-coupled receptors (GPCRs), such as the photoreceptor RHO. The alpha chain contains the guanine nucleotide binding site and alternates between an active, GTP-bound state and an inactive, GDP-bound state. Activated RHO promotes GDP release and GTP binding. Signaling is mediated via downstream effector proteins, such as cGMP-phosphodiesterase (By similarity). . |
Accessions | C9JCV8 ENST00000440836.1 ENST00000433068.5 ENST00000232461.8 P11488 |