Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 6 studies | 23% ± 4% | |
glutamatergic neuron | 4 studies | 33% ± 16% | |
neuron | 3 studies | 22% ± 5% | |
epithelial cell | 3 studies | 20% ± 3% | |
astrocyte | 3 studies | 20% ± 3% | |
oligodendrocyte | 3 studies | 24% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 4 studies | 28% ± 8% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 5374.85 | 652 / 653 | 100% | 53.33 | 605 / 605 |
brain | 100% | 13436.89 | 2641 / 2642 | 100% | 91.99 | 704 / 705 |
uterus | 100% | 4907.54 | 170 / 170 | 100% | 59.65 | 457 / 459 |
skin | 100% | 5403.30 | 1803 / 1809 | 100% | 99.67 | 471 / 472 |
intestine | 100% | 4148.86 | 966 / 966 | 99% | 61.29 | 524 / 527 |
prostate | 100% | 4869.93 | 245 / 245 | 99% | 41.72 | 499 / 502 |
esophagus | 100% | 4859.08 | 1444 / 1445 | 99% | 73.09 | 182 / 183 |
ovary | 100% | 4236.73 | 180 / 180 | 99% | 48.27 | 427 / 430 |
bladder | 100% | 4397.57 | 21 / 21 | 99% | 63.95 | 498 / 504 |
breast | 100% | 6338.82 | 459 / 459 | 98% | 58.41 | 1101 / 1118 |
lung | 100% | 7390.55 | 577 / 578 | 98% | 55.73 | 1134 / 1155 |
kidney | 100% | 3539.93 | 89 / 89 | 98% | 46.02 | 880 / 901 |
stomach | 99% | 3083.42 | 354 / 359 | 99% | 61.31 | 283 / 286 |
adrenal gland | 99% | 2698.71 | 255 / 258 | 97% | 42.59 | 222 / 230 |
pancreas | 91% | 2185.01 | 297 / 328 | 99% | 44.74 | 176 / 178 |
adipose | 100% | 6091.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 124.88 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 52.31 | 29 / 29 |
spleen | 100% | 4919.86 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 63.47 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 48.04 | 1 / 1 |
blood vessel | 99% | 3383.18 | 1321 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 3367.42 | 849 / 861 | 0% | 0 | 0 / 0 |
muscle | 94% | 3487.39 | 756 / 803 | 0% | 0 | 0 / 0 |
liver | 14% | 247.29 | 31 / 226 | 66% | 16.53 | 268 / 406 |
peripheral blood | 76% | 2192.84 | 709 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045454 | Biological process | cell redox homeostasis |
GO_0036465 | Biological process | synaptic vesicle recycling |
GO_0048013 | Biological process | ephrin receptor signaling pathway |
GO_0001957 | Biological process | intramembranous ossification |
GO_0032691 | Biological process | negative regulation of interleukin-1 beta production |
GO_0045820 | Biological process | negative regulation of glycolytic process |
GO_0008277 | Biological process | regulation of G protein-coupled receptor signaling pathway |
GO_0032012 | Biological process | regulation of ARF protein signal transduction |
GO_0090063 | Biological process | positive regulation of microtubule nucleation |
GO_0048666 | Biological process | neuron development |
GO_0099171 | Biological process | presynaptic modulation of chemical synaptic transmission |
GO_0071222 | Biological process | cellular response to lipopolysaccharide |
GO_0007420 | Biological process | brain development |
GO_0106015 | Biological process | negative regulation of inflammatory response to wounding |
GO_0061743 | Biological process | motor learning |
GO_0007626 | Biological process | locomotory behavior |
GO_2000300 | Biological process | regulation of synaptic vesicle exocytosis |
GO_0032465 | Biological process | regulation of cytokinesis |
GO_0097431 | Cellular component | mitotic spindle pole |
GO_0016020 | Cellular component | membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005813 | Cellular component | centrosome |
GO_0098794 | Cellular component | postsynapse |
GO_0043005 | Cellular component | neuron projection |
GO_0005925 | Cellular component | focal adhesion |
GO_0044305 | Cellular component | calyx of Held |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0014069 | Cellular component | postsynaptic density |
GO_0030027 | Cellular component | lamellipodium |
GO_0043015 | Molecular function | gamma-tubulin binding |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0031267 | Molecular function | small GTPase binding |
GO_0005096 | Molecular function | GTPase activator activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | GIT1 |
Protein name | Alternative protein GIT1 GIT ArfGAP 1 GIT1 protein ARF GTPase-activating protein GIT1 (ARF GAP GIT1) (Cool-associated and tyrosine-phosphorylated protein 1) (CAT-1) (CAT1) (G protein-coupled receptor kinase-interactor 1) (GRK-interacting protein 1) (p95-APP1) |
Synonyms | |
Description | FUNCTION: GTPase-activating protein for ADP ribosylation factor family members, including ARF1. Multidomain scaffold protein that interacts with numerous proteins and therefore participates in many cellular functions, including receptor internalization, focal adhesion remodeling, and signaling by both G protein-coupled receptors and tyrosine kinase receptors (By similarity). Through PAK1 activation, positively regulates microtubule nucleation during interphase . Plays a role in the regulation of cytokinesis; for this function, may act in a pathway also involving ENTR1 and PTPN13 . May promote cell motility both by regulating focal complex dynamics and by local activation of RAC1 . May act as scaffold for MAPK1/3 signal transduction in focal adhesions. Recruits MAPK1/3/ERK1/2 to focal adhesions after EGF stimulation via a Src-dependent pathway, hence stimulating cell migration . Plays a role in brain development and function. Involved in the regulation of spine density and synaptic plasticity that is required for processes involved in learning (By similarity). Plays an important role in dendritic spine morphogenesis and synapse formation . In hippocampal neurons, recruits guanine nucleotide exchange factors (GEFs), such as ARHGEF7/beta-PIX, to the synaptic membrane. These in turn locally activate RAC1, which is an essential step for spine morphogenesis and synapse formation . May contribute to the organization of presynaptic active zones through oligomerization and formation of a Piccolo/PCLO-based protein network, which includes ARHGEF7/beta-PIX and FAK1 (By similarity). In neurons, through its interaction with liprin-alpha family members, may be required for AMPA receptor (GRIA2/3) proper targeting to the cell membrane (By similarity). In complex with GABA(A) receptors and ARHGEF7, plays a crucial role in regulating GABA(A) receptor synaptic stability, maintaining GPHN/gephyrin scaffolds and hence GABAergic inhibitory synaptic transmission, by locally coordinating RAC1 and PAK1 downstream effector activity, leading to F-actin stabilization . May also be important for RAC1 downstream signaling pathway through PAK3 and regulation of neuronal inhibitory transmission at presynaptic input (By similarity). Required for successful bone regeneration during fracture healing (By similarity). The function in intramembranous ossification may, at least partly, exerted by macrophages in which GIT1 is a key negative regulator of redox homeostasis, IL1B production, and glycolysis, acting through the ERK1/2/NRF2/NFE2L2 axis (By similarity). May play a role in angiogenesis during fracture healing (By similarity). In this process, may regulate activation of the canonical NF-kappa-B signal in bone mesenchymal stem cells by enhancing the interaction between NEMO and 'Lys-63'-ubiquitinated RIPK1/RIP1, eventually leading to enhanced production of VEGFA and others angiogenic factors . Essential for VEGF signaling through the activation of phospholipase C-gamma and ERK1/2, hence may control endothelial cell proliferation and angiogenesis . . |
Accessions | E7EVC2 J3QLH1 Q6PIN6 A0A0C4DGN6 ENST00000578670.5 ENST00000577466.2 J3QQI0 K7EIX6 ENST00000579937.5 L0R865 Q9Y2X7 ENST00000225394.8 [Q9Y2X7-1] ENST00000394869.7 [Q9Y2X7-3] Q9BSI3 ENST00000581348.5 J3QL89 ENST00000578266.1 ENST00000335356.7 K7EN79 J3QRU8 ENST00000585148.1 ENST00000583413.4 |