Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 22 studies | 33% ± 14% | |
fibroblast | 15 studies | 32% ± 13% | |
mast cell | 12 studies | 31% ± 11% | |
pericyte | 11 studies | 31% ± 13% | |
microglial cell | 10 studies | 33% ± 14% | |
adipocyte | 10 studies | 79% ± 13% | |
astrocyte | 8 studies | 34% ± 14% | |
smooth muscle cell | 7 studies | 25% ± 10% | |
macrophage | 7 studies | 35% ± 13% | |
epithelial cell | 6 studies | 28% ± 15% | |
cardiac muscle cell | 6 studies | 53% ± 22% | |
endothelial cell of lymphatic vessel | 6 studies | 29% ± 14% | |
glutamatergic neuron | 5 studies | 42% ± 21% | |
retinal ganglion cell | 5 studies | 43% ± 14% | |
capillary endothelial cell | 5 studies | 23% ± 4% | |
ciliated cell | 5 studies | 21% ± 8% | |
oligodendrocyte | 5 studies | 28% ± 11% | |
type II pneumocyte | 5 studies | 23% ± 5% | |
hepatocyte | 4 studies | 63% ± 27% | |
retina horizontal cell | 4 studies | 27% ± 13% | |
retinal pigment epithelial cell | 4 studies | 39% ± 10% | |
dendritic cell | 4 studies | 18% ± 2% | |
endothelial cell of vascular tree | 4 studies | 37% ± 14% | |
monocyte | 4 studies | 30% ± 11% | |
type I pneumocyte | 4 studies | 24% ± 4% | |
endothelial cell of artery | 3 studies | 18% ± 1% | |
abnormal cell | 3 studies | 25% ± 7% | |
cholangiocyte | 3 studies | 49% ± 25% | |
muscle cell | 3 studies | 52% ± 24% | |
GABAergic neuron | 3 studies | 51% ± 8% | |
oligodendrocyte precursor cell | 3 studies | 26% ± 2% | |
alveolar macrophage | 3 studies | 25% ± 9% | |
basal cell | 3 studies | 31% ± 21% | |
neuron | 3 studies | 23% ± 8% | |
kidney distal convoluted tubule epithelial cell | 3 studies | 30% ± 10% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 5943.39 | 458 / 459 | 99% | 25.06 | 1109 / 1118 |
adrenal gland | 100% | 7153.28 | 258 / 258 | 99% | 45.05 | 227 / 230 |
lung | 99% | 2775.13 | 570 / 578 | 99% | 25.37 | 1146 / 1155 |
liver | 100% | 3504.25 | 225 / 226 | 98% | 38.65 | 397 / 406 |
bladder | 100% | 2926.24 | 21 / 21 | 96% | 20.67 | 486 / 504 |
thymus | 98% | 1950.48 | 637 / 653 | 99% | 20.66 | 597 / 605 |
uterus | 98% | 2163.60 | 166 / 170 | 98% | 26.53 | 452 / 459 |
skin | 97% | 5420.27 | 1759 / 1809 | 98% | 39.12 | 462 / 472 |
kidney | 97% | 2404.46 | 86 / 89 | 98% | 46.52 | 886 / 901 |
ovary | 94% | 1883.21 | 170 / 180 | 98% | 14.22 | 421 / 430 |
esophagus | 91% | 1875.71 | 1310 / 1445 | 99% | 17.35 | 182 / 183 |
intestine | 78% | 1232.42 | 757 / 966 | 98% | 17.60 | 514 / 527 |
prostate | 71% | 1259.13 | 175 / 245 | 98% | 20.14 | 494 / 502 |
stomach | 62% | 1007.23 | 223 / 359 | 95% | 15.35 | 272 / 286 |
pancreas | 43% | 547.23 | 140 / 328 | 99% | 19.66 | 176 / 178 |
brain | 21% | 332.45 | 563 / 2642 | 100% | 27.29 | 704 / 705 |
adipose | 100% | 7406.52 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 12875.20 | 803 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 5701.63 | 1334 / 1335 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 33.17 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 97% | 15.14 | 28 / 29 |
heart | 93% | 4766.15 | 802 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 88% | 13.30 | 70 / 80 |
spleen | 73% | 976.66 | 175 / 241 | 0% | 0 | 0 / 0 |
peripheral blood | 66% | 2733.66 | 610 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0006091 | Biological process | generation of precursor metabolites and energy |
GO_0043524 | Biological process | negative regulation of neuron apoptotic process |
GO_0005978 | Biological process | glycogen biosynthetic process |
GO_0005977 | Biological process | glycogen metabolic process |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0043169 | Molecular function | cation binding |
GO_0030246 | Molecular function | carbohydrate binding |
GO_0004553 | Molecular function | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO_0003844 | Molecular function | 1,4-alpha-glucan branching enzyme activity |
GO_0005515 | Molecular function | protein binding |
GO_0102752 | Molecular function | 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis) |
Gene name | GBE1 |
Protein name | Alternative protein GBE1 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) 1,4-alpha-glucan-branching enzyme (EC 2.4.1.18) (Brancher enzyme) (Glycogen-branching enzyme) |
Synonyms | |
Description | FUNCTION: Required for normal glycogen accumulation . The alpha 1-6 branches of glycogen play an important role in increasing the solubility of the molecule (Probable). . |
Accessions | E9PGM4 Q04446 L8E8B3 ENST00000429644.7 ENST00000489715.1 |