Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 15 studies | 26% ± 10% | |
astrocyte | 14 studies | 37% ± 19% | |
oligodendrocyte precursor cell | 12 studies | 29% ± 10% | |
oligodendrocyte | 11 studies | 30% ± 12% | |
adipocyte | 9 studies | 31% ± 8% | |
fibroblast | 8 studies | 29% ± 11% | |
GABAergic neuron | 7 studies | 40% ± 17% | |
macrophage | 7 studies | 27% ± 6% | |
microglial cell | 6 studies | 26% ± 14% | |
glutamatergic neuron | 5 studies | 42% ± 18% | |
epithelial cell | 5 studies | 33% ± 20% | |
cardiac muscle cell | 5 studies | 28% ± 7% | |
endothelial cell of lymphatic vessel | 5 studies | 26% ± 3% | |
type I pneumocyte | 5 studies | 28% ± 6% | |
type II pneumocyte | 5 studies | 27% ± 6% | |
smooth muscle cell | 5 studies | 22% ± 5% | |
mesothelial cell | 4 studies | 31% ± 8% | |
retinal rod cell | 4 studies | 23% ± 6% | |
club cell | 4 studies | 25% ± 9% | |
basal cell | 4 studies | 37% ± 23% | |
interneuron | 4 studies | 46% ± 20% | |
GABAergic amacrine cell | 3 studies | 34% ± 12% | |
Mueller cell | 3 studies | 28% ± 7% | |
amacrine cell | 3 studies | 30% ± 7% | |
glycinergic amacrine cell | 3 studies | 30% ± 7% | |
retina horizontal cell | 3 studies | 23% ± 5% | |
retinal cone cell | 3 studies | 35% ± 10% | |
hepatocyte | 3 studies | 48% ± 15% | |
ciliated cell | 3 studies | 28% ± 7% | |
respiratory goblet cell | 3 studies | 30% ± 11% | |
pericyte | 3 studies | 25% ± 11% | |
granule cell | 3 studies | 24% ± 8% | |
neuron | 3 studies | 47% ± 22% | |
mucus secreting cell | 3 studies | 22% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 382.06 | 1445 / 1445 | 100% | 3.51 | 183 / 183 |
prostate | 100% | 336.44 | 245 / 245 | 100% | 3.00 | 500 / 502 |
brain | 99% | 285.13 | 2625 / 2642 | 100% | 3.75 | 705 / 705 |
thymus | 100% | 574.55 | 653 / 653 | 99% | 4.24 | 600 / 605 |
breast | 100% | 502.65 | 459 / 459 | 98% | 3.17 | 1100 / 1118 |
ovary | 100% | 625.45 | 180 / 180 | 98% | 2.85 | 423 / 430 |
skin | 100% | 503.19 | 1809 / 1809 | 97% | 3.59 | 460 / 472 |
stomach | 100% | 279.90 | 358 / 359 | 98% | 3.06 | 279 / 286 |
intestine | 100% | 310.24 | 965 / 966 | 97% | 3.07 | 513 / 527 |
kidney | 100% | 373.40 | 89 / 89 | 97% | 2.90 | 875 / 901 |
bladder | 100% | 397.24 | 21 / 21 | 97% | 3.05 | 489 / 504 |
pancreas | 100% | 296.90 | 327 / 328 | 97% | 2.37 | 173 / 178 |
lung | 99% | 293.15 | 571 / 578 | 98% | 3.23 | 1133 / 1155 |
uterus | 100% | 500.71 | 170 / 170 | 96% | 2.68 | 439 / 459 |
adrenal gland | 100% | 455.81 | 258 / 258 | 93% | 2.48 | 214 / 230 |
liver | 98% | 195.01 | 221 / 226 | 86% | 1.77 | 348 / 406 |
tonsil | 0% | 0 | 0 / 0 | 100% | 2.88 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1.78 | 1 / 1 |
blood vessel | 100% | 524.09 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 426.45 | 801 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 446.22 | 1201 / 1204 | 0% | 0 | 0 / 0 |
spleen | 99% | 237.65 | 239 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 98% | 4.81 | 78 / 80 |
lymph node | 0% | 0 | 0 / 0 | 97% | 2.08 | 28 / 29 |
heart | 97% | 355.73 | 831 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 55% | 195.60 | 513 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0017183 | Biological process | protein histidyl modification to diphthamide |
GO_0005829 | Cellular component | cytosol |
GO_0017178 | Molecular function | diphthine-ammonia ligase activity |
GO_0005524 | Molecular function | ATP binding |
Gene name | DPH6 |
Protein name | Diphthine--ammonia ligase (EC 6.3.1.14) (ATP-binding domain-containing protein 4) (Diphthamide synthase) (Diphthamide synthetase) (Protein DPH6 homolog) |
Synonyms | ATPBD4 |
Description | FUNCTION: Amidase that may catalyze the last step of diphthamide biosynthesis using ammonium and ATP . Diphthamide biosynthesis consists in the conversion of an L-histidine residue in the translation elongation factor (EEF2) to diphthamide (By similarity). . |
Accessions | H0YNH5 ENST00000256538.9 [Q7L8W6-1] ENST00000558266.5 ENST00000561411.1 Q7L8W6 H0YND7 ENST00000440392.3 [Q7L8W6-2] |