Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 19 studies | 36% ± 14% | |
astrocyte | 14 studies | 46% ± 20% | |
oligodendrocyte | 12 studies | 39% ± 14% | |
macrophage | 12 studies | 52% ± 25% | |
glutamatergic neuron | 11 studies | 52% ± 24% | |
fibroblast | 11 studies | 31% ± 12% | |
GABAergic neuron | 9 studies | 50% ± 21% | |
oligodendrocyte precursor cell | 9 studies | 42% ± 18% | |
pericyte | 8 studies | 35% ± 12% | |
microglial cell | 8 studies | 37% ± 15% | |
myeloid cell | 8 studies | 41% ± 20% | |
ciliated cell | 7 studies | 28% ± 12% | |
smooth muscle cell | 7 studies | 28% ± 8% | |
endothelial cell of lymphatic vessel | 7 studies | 38% ± 9% | |
neuron | 6 studies | 50% ± 26% | |
retinal ganglion cell | 6 studies | 43% ± 14% | |
epithelial cell | 6 studies | 23% ± 8% | |
retinal cone cell | 6 studies | 50% ± 17% | |
adipocyte | 6 studies | 24% ± 5% | |
dendritic cell | 6 studies | 30% ± 9% | |
cardiac muscle cell | 5 studies | 44% ± 12% | |
mast cell | 5 studies | 26% ± 10% | |
monocyte | 5 studies | 37% ± 14% | |
basal cell | 5 studies | 40% ± 18% | |
type I pneumocyte | 5 studies | 38% ± 6% | |
type II pneumocyte | 5 studies | 24% ± 3% | |
amacrine cell | 4 studies | 33% ± 6% | |
retina horizontal cell | 4 studies | 30% ± 8% | |
club cell | 4 studies | 23% ± 6% | |
interneuron | 4 studies | 71% ± 16% | |
GABAergic amacrine cell | 3 studies | 35% ± 4% | |
Mueller cell | 3 studies | 22% ± 2% | |
OFF-bipolar cell | 3 studies | 29% ± 3% | |
ON-bipolar cell | 3 studies | 28% ± 3% | |
glycinergic amacrine cell | 3 studies | 26% ± 3% | |
endothelial cell of vascular tree | 3 studies | 36% ± 15% | |
alveolar macrophage | 3 studies | 55% ± 8% | |
muscle cell | 3 studies | 36% ± 23% | |
mesothelial cell | 3 studies | 27% ± 4% | |
granule cell | 3 studies | 44% ± 12% | |
mucus secreting cell | 3 studies | 25% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5216.21 | 2642 / 2642 | 100% | 30.92 | 704 / 705 |
kidney | 100% | 3512.79 | 89 / 89 | 98% | 16.49 | 884 / 901 |
adrenal gland | 100% | 3161.60 | 258 / 258 | 97% | 15.70 | 224 / 230 |
thymus | 100% | 3305.86 | 652 / 653 | 97% | 15.18 | 589 / 605 |
skin | 100% | 2238.37 | 1804 / 1809 | 97% | 14.96 | 458 / 472 |
breast | 100% | 3232.11 | 459 / 459 | 96% | 10.10 | 1078 / 1118 |
lung | 100% | 3284.79 | 577 / 578 | 93% | 10.59 | 1069 / 1155 |
prostate | 100% | 3166.05 | 244 / 245 | 91% | 8.03 | 457 / 502 |
esophagus | 100% | 4067.11 | 1444 / 1445 | 89% | 11.05 | 162 / 183 |
pancreas | 92% | 1232.72 | 303 / 328 | 96% | 10.20 | 170 / 178 |
uterus | 100% | 3897.32 | 170 / 170 | 86% | 7.53 | 394 / 459 |
ovary | 100% | 3675.39 | 180 / 180 | 85% | 6.53 | 366 / 430 |
bladder | 100% | 4415.38 | 21 / 21 | 79% | 7.84 | 396 / 504 |
stomach | 100% | 2804.53 | 359 / 359 | 52% | 4.76 | 149 / 286 |
intestine | 96% | 3541.32 | 927 / 966 | 30% | 2.34 | 158 / 527 |
adipose | 100% | 3820.17 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 4151.45 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 2458.78 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 3.61 | 1 / 1 |
muscle | 100% | 5501.85 | 801 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 2819.13 | 845 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 86% | 9.57 | 69 / 80 |
tonsil | 0% | 0 | 0 / 0 | 80% | 4.68 | 36 / 45 |
lymph node | 0% | 0 | 0 / 0 | 72% | 4.46 | 21 / 29 |
liver | 24% | 217.29 | 55 / 226 | 42% | 3.09 | 171 / 406 |
peripheral blood | 7% | 56.20 | 65 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008150 | Biological process | biological_process |
GO_0005575 | Cellular component | cellular_component |
GO_0005515 | Molecular function | protein binding |
Gene name | DNAAF9 |
Protein name | C20orf194 protein Dynein axonemal assembly factor 9 (DNAAF9) |
Synonyms | C20orf194 |
Description | FUNCTION: May act as an effector for ARL3. |
Accessions | Q5TEA3 ENST00000252032.10 Q3KQR5 Q0IIP3 |