Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 17 studies | 50% ± 16% | |
retinal rod cell | 6 studies | 37% ± 14% | |
deuterosomal cell | 4 studies | 25% ± 2% | |
epithelial cell | 3 studies | 26% ± 4% | |
retinal cone cell | 3 studies | 29% ± 5% | |
type I pneumocyte | 3 studies | 17% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 912.02 | 653 / 653 | 73% | 1.47 | 442 / 605 |
ovary | 100% | 126.74 | 180 / 180 | 60% | 1.19 | 259 / 430 |
breast | 97% | 123.18 | 446 / 459 | 34% | 0.53 | 377 / 1118 |
kidney | 100% | 209.45 | 89 / 89 | 28% | 0.46 | 248 / 901 |
brain | 95% | 149.13 | 2518 / 2642 | 31% | 0.47 | 216 / 705 |
adrenal gland | 99% | 127.79 | 256 / 258 | 22% | 0.31 | 51 / 230 |
lung | 99% | 239.87 | 571 / 578 | 17% | 0.28 | 200 / 1155 |
uterus | 100% | 145.47 | 170 / 170 | 14% | 0.26 | 65 / 459 |
bladder | 100% | 91.24 | 21 / 21 | 10% | 0.14 | 52 / 504 |
esophagus | 93% | 65.84 | 1344 / 1445 | 16% | 0.28 | 30 / 183 |
pancreas | 98% | 94.19 | 321 / 328 | 11% | 0.15 | 19 / 178 |
prostate | 97% | 89.91 | 238 / 245 | 6% | 0.08 | 29 / 502 |
blood vessel | 94% | 75.46 | 1261 / 1335 | 0% | 0 | 0 / 0 |
adipose | 93% | 71.22 | 1115 / 1204 | 0% | 0 | 0 / 0 |
skin | 88% | 76.30 | 1596 / 1809 | 2% | 0.03 | 10 / 472 |
stomach | 75% | 51.65 | 271 / 359 | 12% | 0.19 | 34 / 286 |
intestine | 80% | 66.06 | 773 / 966 | 6% | 0.08 | 30 / 527 |
spleen | 80% | 41.12 | 193 / 241 | 0% | 0 | 0 / 0 |
heart | 42% | 19.63 | 364 / 861 | 0% | 0 | 0 / 0 |
muscle | 22% | 9.45 | 179 / 803 | 0% | 0 | 0 / 0 |
liver | 2% | 1.11 | 5 / 226 | 5% | 0.07 | 20 / 406 |
peripheral blood | 7% | 3.17 | 65 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 7% | 0.16 | 2 / 29 |
tonsil | 0% | 0 | 0 / 0 | 4% | 0.05 | 2 / 45 |
eye | 0% | 0 | 0 / 0 | 1% | 0.01 | 1 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0036159 | Biological process | inner dynein arm assembly |
GO_0007507 | Biological process | heart development |
GO_0007611 | Biological process | learning or memory |
GO_0007368 | Biological process | determination of left/right symmetry |
GO_0033146 | Biological process | regulation of intracellular estrogen receptor signaling pathway |
GO_0001764 | Biological process | neuron migration |
GO_0051649 | Biological process | establishment of localization in cell |
GO_0003351 | Biological process | epithelial cilium movement involved in extracellular fluid movement |
GO_0003341 | Biological process | cilium movement |
GO_0061136 | Biological process | regulation of proteasomal protein catabolic process |
GO_0036158 | Biological process | outer dynein arm assembly |
GO_0005576 | Cellular component | extracellular region |
GO_0005886 | Cellular component | plasma membrane |
GO_0005813 | Cellular component | centrosome |
GO_0043005 | Cellular component | neuron projection |
GO_0120293 | Cellular component | dynein axonemal particle |
GO_0097730 | Cellular component | non-motile cilium |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0030331 | Molecular function | nuclear estrogen receptor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | DNAAF4 |
Protein name | Dynein axonemal assembly factor 4 Dynein axonemal assembly factor 4 (Dyslexia susceptibility 1 candidate gene 1 protein) |
Synonyms | DYX1C1 EKN1 |
Description | FUNCTION: Axonemal dynein assembly factor required for ciliary motility. Involved in neuronal migration during development of the cerebral neocortex. May regulate the stability and proteasomal degradation of the estrogen receptors that play an important role in neuronal differentiation, survival and plasticity. . |
Accessions | ENST00000522437.1 A0A0S2Z5Y0 ENST00000524160.5 ENST00000348518.4 [Q8WXU2-1] ENST00000448430.6 [Q8WXU2-2] A0A0S2Z5X9 ENST00000457155.6 [Q8WXU2-3] E5RJ13 Q8WXU2 B4DY92 A0A0S2Z5Z4 ENST00000321149.7 [Q8WXU2-1] |