Name | Number of supported studies | Average coverage | |
---|---|---|---|
fibroblast | 14 studies | 39% ± 21% | |
endothelial cell of lymphatic vessel | 13 studies | 41% ± 18% | |
endothelial cell | 8 studies | 31% ± 9% | |
endothelial cell of vascular tree | 4 studies | 24% ± 6% | |
connective tissue cell | 4 studies | 35% ± 26% | |
pericyte | 3 studies | 26% ± 7% | |
vein endothelial cell | 3 studies | 36% ± 11% | |
chondrocyte | 3 studies | 29% ± 4% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
skin | 3 studies | 20% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 98% | 1491.18 | 450 / 459 | 95% | 206.19 | 1063 / 1118 |
skin | 88% | 4721.37 | 1596 / 1809 | 86% | 175.56 | 407 / 472 |
bladder | 95% | 721.43 | 20 / 21 | 66% | 86.73 | 332 / 504 |
lung | 51% | 398.33 | 295 / 578 | 89% | 134.42 | 1027 / 1155 |
uterus | 48% | 289.54 | 81 / 170 | 70% | 102.02 | 320 / 459 |
ovary | 31% | 154.14 | 56 / 180 | 77% | 107.02 | 332 / 430 |
thymus | 73% | 485.74 | 479 / 653 | 31% | 22.77 | 187 / 605 |
pancreas | 9% | 78.81 | 30 / 328 | 91% | 227.74 | 162 / 178 |
blood vessel | 97% | 2030.99 | 1290 / 1335 | 0% | 0 | 0 / 0 |
adipose | 95% | 2527.71 | 1143 / 1204 | 0% | 0 | 0 / 0 |
esophagus | 21% | 102.25 | 299 / 1445 | 72% | 84.20 | 131 / 183 |
intestine | 30% | 133.93 | 289 / 966 | 62% | 70.17 | 327 / 527 |
stomach | 13% | 62.26 | 48 / 359 | 70% | 68.78 | 200 / 286 |
tonsil | 0% | 0 | 0 / 0 | 64% | 64.11 | 29 / 45 |
kidney | 17% | 89.39 | 15 / 89 | 33% | 31.50 | 300 / 901 |
prostate | 36% | 201.37 | 89 / 245 | 11% | 6.05 | 54 / 502 |
lymph node | 0% | 0 | 0 / 0 | 41% | 22.53 | 12 / 29 |
eye | 0% | 0 | 0 / 0 | 38% | 21.53 | 30 / 80 |
adrenal gland | 16% | 53.61 | 41 / 258 | 9% | 6.67 | 21 / 230 |
heart | 23% | 148.74 | 194 / 861 | 0% | 0 | 0 / 0 |
liver | 1% | 6.76 | 2 / 226 | 19% | 15.19 | 78 / 406 |
brain | 4% | 15.88 | 116 / 2642 | 12% | 10.89 | 85 / 705 |
spleen | 12% | 36.63 | 28 / 241 | 0% | 0 | 0 / 0 |
muscle | 9% | 49.15 | 73 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0033687 | Biological process | osteoblast proliferation |
GO_0060071 | Biological process | Wnt signaling pathway, planar cell polarity pathway |
GO_0090177 | Biological process | establishment of planar polarity involved in neural tube closure |
GO_0043932 | Biological process | ossification involved in bone remodeling |
GO_0060122 | Biological process | inner ear receptor cell stereocilium organization |
GO_0033690 | Biological process | positive regulation of osteoblast proliferation |
GO_0090090 | Biological process | negative regulation of canonical Wnt signaling pathway |
GO_0045669 | Biological process | positive regulation of osteoblast differentiation |
GO_0090103 | Biological process | cochlea morphogenesis |
GO_0001649 | Biological process | osteoblast differentiation |
GO_0005615 | Cellular component | extracellular space |
GO_0016528 | Cellular component | sarcoplasm |
GO_0005581 | Cellular component | collagen trimer |
GO_0005576 | Cellular component | extracellular region |
GO_0062023 | Cellular component | collagen-containing extracellular matrix |
GO_0005201 | Molecular function | extracellular matrix structural constituent |
GO_0017147 | Molecular function | Wnt-protein binding |
GO_0005109 | Molecular function | frizzled binding |
Gene name | CTHRC1 |
Protein name | Collagen triple helix repeat containing 1 Collagen triple helix repeat-containing protein 1 |
Synonyms | UNQ762/PRO1550 |
Description | FUNCTION: May act as a negative regulator of collagen matrix deposition. . |
Accessions | ENST00000330295.10 [Q96CG8-1] ENST00000520880.1 E5RK99 Q96CG8 ENST00000415886.2 ENST00000520337.1 [Q96CG8-3] E7EVQ5 |