Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 9 studies | 41% ± 25% | |
oligodendrocyte precursor cell | 9 studies | 29% ± 13% | |
endothelial cell | 7 studies | 30% ± 8% | |
GABAergic neuron | 7 studies | 39% ± 19% | |
oligodendrocyte | 7 studies | 26% ± 8% | |
neuron | 6 studies | 30% ± 11% | |
interneuron | 6 studies | 38% ± 22% | |
macrophage | 6 studies | 22% ± 5% | |
epithelial cell | 6 studies | 32% ± 13% | |
ciliated cell | 6 studies | 27% ± 10% | |
astrocyte | 6 studies | 31% ± 9% | |
microglial cell | 5 studies | 23% ± 5% | |
amacrine cell | 4 studies | 23% ± 5% | |
fibroblast | 4 studies | 20% ± 4% | |
hepatocyte | 4 studies | 32% ± 15% | |
endothelial cell of lymphatic vessel | 4 studies | 18% ± 2% | |
basal cell | 4 studies | 28% ± 11% | |
pancreatic A cell | 3 studies | 23% ± 6% | |
granule cell | 3 studies | 21% ± 4% | |
retina horizontal cell | 3 studies | 24% ± 5% | |
retinal bipolar neuron | 3 studies | 30% ± 10% | |
retinal cone cell | 3 studies | 27% ± 3% | |
retinal rod cell | 3 studies | 19% ± 3% | |
Mueller cell | 3 studies | 20% ± 4% | |
GABAergic amacrine cell | 3 studies | 23% ± 5% | |
glycinergic amacrine cell | 3 studies | 20% ± 4% | |
rod bipolar cell | 3 studies | 24% ± 6% | |
dendritic cell | 3 studies | 19% ± 2% | |
neural progenitor cell | 3 studies | 19% ± 4% | |
goblet cell | 3 studies | 28% ± 11% | |
transit amplifying cell | 3 studies | 32% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1073.51 | 1445 / 1445 | 100% | 21.53 | 183 / 183 |
liver | 100% | 992.94 | 226 / 226 | 100% | 10.81 | 406 / 406 |
ovary | 100% | 1247.92 | 180 / 180 | 100% | 19.45 | 430 / 430 |
prostate | 100% | 1452.94 | 245 / 245 | 100% | 17.83 | 502 / 502 |
uterus | 100% | 1334.09 | 170 / 170 | 100% | 23.68 | 459 / 459 |
breast | 100% | 1096.50 | 459 / 459 | 100% | 23.57 | 1117 / 1118 |
brain | 100% | 1344.67 | 2639 / 2642 | 100% | 20.89 | 705 / 705 |
bladder | 100% | 1237.90 | 21 / 21 | 100% | 19.13 | 503 / 504 |
pancreas | 100% | 656.95 | 327 / 328 | 100% | 14.67 | 178 / 178 |
thymus | 100% | 1511.73 | 653 / 653 | 100% | 19.22 | 603 / 605 |
kidney | 100% | 1138.22 | 89 / 89 | 100% | 11.67 | 898 / 901 |
lung | 100% | 1202.89 | 576 / 578 | 100% | 18.12 | 1155 / 1155 |
stomach | 100% | 841.60 | 359 / 359 | 100% | 17.19 | 285 / 286 |
intestine | 100% | 1143.06 | 966 / 966 | 100% | 16.83 | 525 / 527 |
skin | 100% | 1403.87 | 1808 / 1809 | 98% | 17.18 | 464 / 472 |
adrenal gland | 100% | 1113.37 | 258 / 258 | 97% | 12.06 | 222 / 230 |
lymph node | 0% | 0 | 0 / 0 | 100% | 18.67 | 29 / 29 |
spleen | 100% | 1445.09 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 20.07 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 12.30 | 1 / 1 |
adipose | 100% | 933.24 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 973.63 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 656.74 | 797 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 620.87 | 836 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 91% | 8.12 | 73 / 80 |
peripheral blood | 67% | 816.91 | 618 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0180010 | Biological process | co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway |
GO_0031123 | Biological process | RNA 3'-end processing |
GO_0005848 | Cellular component | mRNA cleavage stimulating factor complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | CSTF3 |
Protein name | Cleavage stimulation factor subunit 3 (CF-1 77 kDa subunit) (Cleavage stimulation factor 77 kDa subunit) (CSTF 77 kDa subunit) (CstF-77) Cleavage stimulation factor subunit 3 |
Synonyms | |
Description | FUNCTION: One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. |
Accessions | ENST00000431742.2 [Q12996-3] Q12996 E9PNK2 E9PLP8 ENST00000524775.1 ENST00000528865.5 ENST00000524556.1 ENST00000438862.6 [Q12996-2] ENST00000323959.9 [Q12996-1] H0YE74 E9PJ06 ENST00000524827.6 |