Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2705.42 | 1445 / 1445 | 100% | 38.67 | 183 / 183 |
ovary | 100% | 3426.97 | 180 / 180 | 100% | 50.37 | 430 / 430 |
brain | 100% | 4099.18 | 2640 / 2642 | 100% | 79.65 | 705 / 705 |
breast | 100% | 3644.47 | 459 / 459 | 100% | 54.85 | 1117 / 1118 |
thymus | 100% | 2794.60 | 653 / 653 | 100% | 39.12 | 604 / 605 |
uterus | 100% | 3697.04 | 170 / 170 | 100% | 41.38 | 458 / 459 |
skin | 100% | 4748.39 | 1808 / 1809 | 100% | 74.52 | 471 / 472 |
kidney | 100% | 2733.53 | 89 / 89 | 100% | 43.38 | 898 / 901 |
lung | 100% | 2526.53 | 576 / 578 | 100% | 41.04 | 1155 / 1155 |
prostate | 100% | 2698.62 | 244 / 245 | 100% | 35.73 | 501 / 502 |
stomach | 100% | 2102.11 | 359 / 359 | 99% | 35.87 | 284 / 286 |
bladder | 100% | 3175.52 | 21 / 21 | 99% | 31.70 | 500 / 504 |
adrenal gland | 100% | 3062.76 | 258 / 258 | 99% | 58.48 | 227 / 230 |
intestine | 100% | 2537.20 | 966 / 966 | 98% | 33.03 | 519 / 527 |
liver | 94% | 1065.07 | 212 / 226 | 98% | 20.63 | 396 / 406 |
pancreas | 87% | 940.00 | 284 / 328 | 99% | 38.59 | 176 / 178 |
adipose | 100% | 4000.87 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 48.70 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 35.83 | 29 / 29 |
muscle | 100% | 7739.26 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1844.29 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 35.35 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 19.33 | 1 / 1 |
blood vessel | 100% | 3865.26 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 3427.82 | 842 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 40% | 864.43 | 372 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_2000434 | Biological process | regulation of protein neddylation |
GO_0007250 | Biological process | activation of NF-kappaB-inducing kinase activity |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0006468 | Biological process | protein phosphorylation |
GO_0045116 | Biological process | protein neddylation |
GO_0000338 | Biological process | protein deneddylation |
GO_0010387 | Biological process | COP9 signalosome assembly |
GO_0008180 | Cellular component | COP9 signalosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0005515 | Molecular function | protein binding |
Gene name | COPS8 |
Protein name | COP9 signalosome subunit 8 COP9 signalosome complex subunit 8 (SGN8) (Signalosome subunit 8) (COP9 homolog) (hCOP9) (JAB1-containing signalosome subunit 8) |
Synonyms | CSN8 |
Description | FUNCTION: Component of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes. The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF-type complexes such as SCF, CSA or DDB2. The complex is also involved in phosphorylation of p53/TP53, c-jun/JUN, IkappaBalpha/NFKBIA, ITPK1 and IRF8/ICSBP, possibly via its association with CK2 and PKD kinases. CSN-dependent phosphorylation of TP53 and JUN promotes and protects degradation by the Ubl system, respectively. . |
Accessions | ENST00000419015.1 ENST00000409334.5 H7C3S9 Q99627 E9PGT6 ENST00000354371.7 [Q99627-1] ENST00000447464.1 ENST00000392008.6 [Q99627-2] F8WEF2 |