COL16A1 | OmnibusX

Name	Number of supported studies	Average coverage
fibroblast	18 studies	23% ± 6%	Explore
astrocyte	9 studies	33% ± 13%	Explore
oligodendrocyte precursor cell	9 studies	32% ± 12%	Explore
myofibroblast cell	9 studies	24% ± 7%	Explore
oligodendrocyte	9 studies	26% ± 9%	Explore
connective tissue cell	5 studies	31% ± 15%	Explore
adventitial cell	3 studies	18% ± 3%	Explore
chondrocyte	3 studies	37% ± 12%	Explore

Name	Number of supported studies	Average coverage
brain	4 studies	29% ± 5%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
thymus	100%	13765.03	652 / 653	97%	31.08	589 / 605
prostate	100%	28953.43	245 / 245	97%	27.12	485 / 502
breast	98%	10654.40	452 / 459	96%	43.56	1069 / 1118
skin	100%	13546.58	1807 / 1809	92%	38.84	436 / 472
uterus	100%	23926.43	170 / 170	91%	47.43	416 / 459
brain	94%	6758.55	2482 / 2642	94%	27.93	662 / 705
lung	98%	7372.15	565 / 578	87%	26.35	1004 / 1155
esophagus	92%	8657.42	1325 / 1445	87%	25.54	160 / 183
intestine	98%	14091.54	946 / 966	79%	18.49	416 / 527
stomach	94%	8765.65	336 / 359	82%	17.87	235 / 286
bladder	100%	27886.38	21 / 21	73%	22.03	366 / 504
ovary	100%	41901.58	180 / 180	59%	10.93	255 / 430
adrenal gland	63%	2379.11	163 / 258	52%	8.15	119 / 230
pancreas	10%	352.63	33 / 328	96%	66.48	170 / 178
blood vessel	100%	17366.91	1331 / 1335	0%	0	0 / 0
adipose	96%	7724.96	1154 / 1204	0%	0	0 / 0
tonsil	0%	0	0 / 0	91%	41.51	41 / 45
kidney	54%	2805.48	48 / 89	31%	5.11	275 / 901
heart	63%	3694.23	544 / 861	0%	0	0 / 0
lymph node	0%	0	0 / 0	52%	8.05	15 / 29
eye	0%	0	0 / 0	49%	6.96	39 / 80
spleen	34%	1230.97	83 / 241	0%	0	0 / 0
liver	4%	104.88	9 / 226	21%	4.15	87 / 406
muscle	11%	365.19	91 / 803	0%	0	0 / 0
peripheral blood	1%	16.67	5 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1

GO_0030198	Biological process	extracellular matrix organization
GO_0071230	Biological process	cellular response to amino acid stimulus
GO_0007229	Biological process	integrin-mediated signaling pathway
GO_0033622	Biological process	integrin activation
GO_0007155	Biological process	cell adhesion
GO_0033627	Biological process	cell adhesion mediated by integrin
GO_0007565	Biological process	female pregnancy
GO_0051894	Biological process	positive regulation of focal adhesion assembly
GO_0005615	Cellular component	extracellular space
GO_0005788	Cellular component	endoplasmic reticulum lumen
GO_0005597	Cellular component	collagen type XVI trimer
GO_0005576	Cellular component	extracellular region
GO_0062023	Cellular component	collagen-containing extracellular matrix
GO_0005594	Cellular component	collagen type IX trimer
GO_0030020	Molecular function	extracellular matrix structural constituent conferring tensile strength
GO_0005515	Molecular function	protein binding
GO_0005178	Molecular function	integrin binding

Gene name	COL16A1
Protein name	Collagen alpha-1(XVI) chain Collagen type XVI alpha 1 chain
Synonyms	FP1572
Description	FUNCTION: Involved in mediating cell attachment and inducing integrin-mediated cellular reactions, such as cell spreading and alterations in cell morphology. .
Accessions	Q07092 ENST00000373672.8 [Q07092-1] A6NCT7 H7C3F0 H7BY97 H7BZL8 ENST00000458715.5 ENST00000373667.4 ENST00000440437.1 ENST00000373668.7

COL16A1 report