Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 13 studies | 67% ± 19% | |
pericyte | 11 studies | 33% ± 16% | |
oligodendrocyte precursor cell | 11 studies | 38% ± 12% | |
GABAergic neuron | 10 studies | 60% ± 25% | |
fibroblast | 7 studies | 26% ± 18% | |
neuron | 6 studies | 36% ± 14% | |
interneuron | 6 studies | 65% ± 22% | |
retina horizontal cell | 6 studies | 77% ± 25% | |
endothelial cell | 5 studies | 42% ± 17% | |
retinal bipolar neuron | 5 studies | 46% ± 21% | |
basal cell | 5 studies | 40% ± 26% | |
smooth muscle cell | 5 studies | 30% ± 9% | |
type I pneumocyte | 5 studies | 36% ± 10% | |
granule cell | 4 studies | 62% ± 18% | |
Mueller cell | 4 studies | 50% ± 9% | |
club cell | 4 studies | 31% ± 16% | |
type II pneumocyte | 4 studies | 29% ± 8% | |
GABAergic interneuron | 3 studies | 68% ± 13% | |
epithelial cell | 3 studies | 43% ± 21% | |
macrophage | 3 studies | 25% ± 7% | |
microglial cell | 3 studies | 43% ± 25% | |
mesothelial cell | 3 studies | 30% ± 9% | |
GABAergic amacrine cell | 3 studies | 64% ± 10% | |
OFF-bipolar cell | 3 studies | 44% ± 21% | |
ON-bipolar cell | 3 studies | 39% ± 13% | |
amacrine cell | 3 studies | 66% ± 26% | |
glycinergic amacrine cell | 3 studies | 74% ± 3% | |
rod bipolar cell | 3 studies | 85% ± 17% | |
retinal pigment epithelial cell | 3 studies | 33% ± 6% | |
Schwann cell | 3 studies | 34% ± 21% | |
astrocyte | 3 studies | 45% ± 28% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
thymus | 100% | 1515.51 | 652 / 653 | 95% | 8.99 | 572 / 605 |
prostate | 88% | 566.08 | 216 / 245 | 81% | 2.99 | 408 / 502 |
breast | 68% | 342.25 | 310 / 459 | 66% | 3.11 | 736 / 1118 |
brain | 82% | 769.69 | 2154 / 2642 | 49% | 1.73 | 348 / 705 |
uterus | 94% | 772.49 | 159 / 170 | 26% | 0.90 | 120 / 459 |
kidney | 40% | 153.15 | 36 / 89 | 79% | 3.74 | 713 / 901 |
lung | 86% | 401.67 | 497 / 578 | 31% | 0.90 | 353 / 1155 |
intestine | 84% | 468.73 | 816 / 966 | 28% | 0.63 | 148 / 527 |
blood vessel | 100% | 3359.34 | 1334 / 1335 | 0% | 0 | 0 / 0 |
esophagus | 60% | 314.80 | 872 / 1445 | 38% | 0.87 | 70 / 183 |
bladder | 81% | 447.10 | 17 / 21 | 17% | 0.36 | 88 / 504 |
stomach | 55% | 227.93 | 197 / 359 | 42% | 1.17 | 121 / 286 |
pancreas | 18% | 58.31 | 58 / 328 | 78% | 2.36 | 138 / 178 |
adipose | 80% | 485.05 | 958 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 51% | 1.57 | 41 / 80 |
ovary | 20% | 108.98 | 36 / 180 | 30% | 1.01 | 131 / 430 |
skin | 13% | 46.44 | 228 / 1809 | 36% | 3.14 | 172 / 472 |
adrenal gland | 7% | 21.02 | 17 / 258 | 28% | 1.37 | 65 / 230 |
heart | 30% | 127.18 | 254 / 861 | 0% | 0 | 0 / 0 |
liver | 11% | 32.74 | 25 / 226 | 14% | 0.29 | 55 / 406 |
tonsil | 0% | 0 | 0 / 0 | 20% | 0.52 | 9 / 45 |
muscle | 4% | 15.44 | 36 / 803 | 0% | 0 | 0 / 0 |
spleen | 2% | 8.05 | 6 / 241 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0007409 | Biological process | axonogenesis |
GO_0007420 | Biological process | brain development |
GO_0048167 | Biological process | regulation of synaptic plasticity |
GO_0045665 | Biological process | negative regulation of neuron differentiation |
GO_0007156 | Biological process | homophilic cell adhesion via plasma membrane adhesion molecules |
GO_0050808 | Biological process | synapse organization |
GO_0007158 | Biological process | neuron cell-cell adhesion |
GO_0007399 | Biological process | nervous system development |
GO_0007413 | Biological process | axonal fasciculation |
GO_0007411 | Biological process | axon guidance |
GO_0070593 | Biological process | dendrite self-avoidance |
GO_0031175 | Biological process | neuron projection development |
GO_0098552 | Cellular component | side of membrane |
GO_0030424 | Cellular component | axon |
GO_0005576 | Cellular component | extracellular region |
GO_0045202 | Cellular component | synapse |
GO_0005886 | Cellular component | plasma membrane |
GO_0098632 | Molecular function | cell-cell adhesion mediator activity |
Gene name | CNTN4 |
Protein name | Contactin-4 (Brain-derived immunoglobulin superfamily protein 2) (BIG-2) Contactin 4 |
Synonyms | |
Description | FUNCTION: Contactins mediate cell surface interactions during nervous system development. Has some neurite outgrowth-promoting activity. May be involved in synaptogenesis. |
Accessions | C9JGK9 ENST00000434053.5 ENST00000427741.5 Q8IWV2 F8WD58 ENST00000397461.5 [Q8IWV2-1] C9JMQ2 ENST00000473845.1 ENST00000455083.5 ENST00000427331.5 [Q8IWV2-1] ENST00000397459.6 [Q8IWV2-4] C9JIY1 ENST00000418658.6 [Q8IWV2-1] H0Y8U1 ENST00000422330.5 |