I. Expression across cell types
Name | Number of supported studies  | Average coverage | |
|---|---|---|---|
| retinal bipolar neuron | 4 studies | 28% ± 7% | |
| epithelial cell | 4 studies | 26% ± 9% | |
| macrophage | 4 studies | 19% ± 4% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| retinal bipolar neuron | 4 studies | 28% ± 7% | |
| epithelial cell | 4 studies | 26% ± 9% | |
| macrophage | 4 studies | 19% ± 4% |
Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| brain | 3 studies | 20% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| esophagus | 100% | 1379.35 | 1444 / 1445 | 100% | 11.23 | 183 / 183 |
| intestine | 100% | 1469.54 | 966 / 966 | 100% | 15.06 | 526 / 527 |
| skin | 100% | 2019.72 | 1809 / 1809 | 100% | 22.70 | 471 / 472 |
| stomach | 100% | 1230.32 | 358 / 359 | 100% | 14.13 | 286 / 286 |
| breast | 100% | 1467.44 | 459 / 459 | 99% | 11.50 | 1108 / 1118 |
| ovary | 100% | 1017.58 | 180 / 180 | 99% | 9.15 | 426 / 430 |
| lung | 100% | 1742.69 | 577 / 578 | 99% | 11.13 | 1145 / 1155 |
| pancreas | 100% | 1284.99 | 328 / 328 | 99% | 9.17 | 176 / 178 |
| kidney | 100% | 2129.98 | 89 / 89 | 99% | 9.96 | 889 / 901 |
| brain | 100% | 1186.50 | 2633 / 2642 | 99% | 5.76 | 698 / 705 |
| bladder | 100% | 1383.05 | 21 / 21 | 99% | 11.27 | 497 / 504 |
| prostate | 100% | 1691.38 | 245 / 245 | 98% | 7.93 | 492 / 502 |
| uterus | 100% | 1396.32 | 170 / 170 | 98% | 12.18 | 448 / 459 |
| thymus | 100% | 1781.94 | 653 / 653 | 97% | 7.18 | 588 / 605 |
| liver | 100% | 1399.20 | 226 / 226 | 95% | 7.11 | 384 / 406 |
| adrenal gland | 100% | 1949.78 | 258 / 258 | 90% | 7.39 | 208 / 230 |
| adipose | 100% | 1421.66 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 100% | 34.54 | 80 / 80 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 11.52 | 29 / 29 |
| muscle | 100% | 1128.01 | 803 / 803 | 0% | 0 | 0 / 0 |
| spleen | 100% | 2410.44 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 12.24 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 8.24 | 1 / 1 |
| blood vessel | 99% | 780.29 | 1317 / 1335 | 0% | 0 | 0 / 0 |
| heart | 98% | 646.91 | 840 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 97% | 1708.54 | 901 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0007040 | Biological process | lysosome organization |
| GO_0007601 | Biological process | visual perception |
| GO_0001573 | Biological process | ganglioside metabolic process |
| GO_0045862 | Biological process | positive regulation of proteolysis |
| GO_0007042 | Biological process | lysosomal lumen acidification |
| GO_0008203 | Biological process | cholesterol metabolic process |
| GO_0030203 | Biological process | glycosaminoglycan metabolic process |
| GO_0031987 | Biological process | locomotion involved in locomotory behavior |
| GO_0030163 | Biological process | protein catabolic process |
| GO_0005730 | Cellular component | nucleolus |
| GO_0045121 | Cellular component | membrane raft |
| GO_0016020 | Cellular component | membrane |
| GO_0005789 | Cellular component | endoplasmic reticulum membrane |
| GO_0005769 | Cellular component | early endosome |
| GO_0005788 | Cellular component | endoplasmic reticulum lumen |
| GO_0005783 | Cellular component | endoplasmic reticulum |
| GO_0043231 | Cellular component | intracellular membrane-bounded organelle |
| GO_0042803 | Molecular function | protein homodimerization activity |
| GO_0035727 | Molecular function | lysophosphatidic acid binding |
| GO_0005515 | Molecular function | protein binding |
| GO_0120146 | Molecular function | sulfatide binding |
| Gene name | CLN6 |
| Protein name | CLN6 transmembrane ER protein (Ceroid-lipofuscinosis, neuronal 6, late infantile, variant, isoform CRA_e) CLN6 transmembrane ER protein (Ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 5) (Ceroid-lipofuscinosis, neuronal 6, late infantile, variant, isoform CRA_c) Ceroid-lipofuscinosis neuronal protein 6 (Protein CLN6) Ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 1 Ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 4 CLN6 transmembrane ER protein (Ceroid-lipofuscinosis neuronal 6 late infantile variant isoform 2) CLN6 transmembrane ER protein |
| Synonyms | hCG_23813 |
| Description | |
| Accessions | ENST00000249806.11 [Q9NWW5-1] ENST00000637823.1 ENST00000638076.1 ENST00000637223.1 ENST00000564752.1 A0A1B0GUD2 ENST00000566347.5 A0A024R601 A0A0S2Z5G3 A0A1B0GTV3 A0A1B0GUY3 A0A1B0GU90 A0A1B0GVR8 ENST00000637329.1 ENST00000636314.1 ENST00000636212.1 ENST00000635747.1 ENST00000636876.1 A0A1B0GTD3 ENST00000567060.5 H3BTY4 H3BNF1 A0A0S2Z5D0 A0A1B0GUQ7 Q9NWW5 A0A1B0GU39 H3BUT1 ENST00000637494.1 ENST00000637450.1 ENST00000538696.5 [Q9NWW5-2] ENST00000565471.6 H3BUV4 ENST00000637667.1 A0A1B0GTU6 |
