Name | Number of supported studies | Average coverage | |
---|---|---|---|
glutamatergic neuron | 12 studies | 60% ± 21% | |
astrocyte | 11 studies | 28% ± 12% | |
GABAergic neuron | 7 studies | 57% ± 19% | |
interneuron | 7 studies | 38% ± 23% | |
neuron | 5 studies | 35% ± 16% | |
cardiac muscle cell | 5 studies | 23% ± 4% | |
amacrine cell | 4 studies | 43% ± 13% | |
retinal bipolar neuron | 4 studies | 71% ± 18% | |
granule cell | 4 studies | 52% ± 21% | |
OFF-bipolar cell | 4 studies | 52% ± 16% | |
ON-bipolar cell | 4 studies | 61% ± 17% | |
retinal ganglion cell | 4 studies | 62% ± 22% | |
type B pancreatic cell | 3 studies | 32% ± 9% | |
GABAergic interneuron | 3 studies | 43% ± 6% | |
rod bipolar cell | 3 studies | 75% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 97% | 24573.47 | 2551 / 2642 | 98% | 32.17 | 688 / 705 |
thymus | 98% | 4729.17 | 638 / 653 | 92% | 20.50 | 554 / 605 |
prostate | 6% | 138.09 | 15 / 245 | 95% | 10.50 | 475 / 502 |
muscle | 100% | 10116.33 | 803 / 803 | 0% | 0 | 0 / 0 |
heart | 95% | 7764.99 | 821 / 861 | 0% | 0 | 0 / 0 |
adrenal gland | 7% | 298.92 | 18 / 258 | 73% | 61.22 | 167 / 230 |
breast | 1% | 15.17 | 4 / 459 | 38% | 3.44 | 427 / 1118 |
pancreas | 0% | 9.60 | 1 / 328 | 33% | 4.42 | 58 / 178 |
kidney | 0% | 0 | 0 / 89 | 31% | 2.67 | 277 / 901 |
liver | 10% | 198.39 | 22 / 226 | 20% | 0.99 | 82 / 406 |
ovary | 0% | 0 | 0 / 180 | 25% | 1.10 | 107 / 430 |
lymph node | 0% | 0 | 0 / 0 | 24% | 4.89 | 7 / 29 |
uterus | 0% | 0 | 0 / 170 | 22% | 2.53 | 99 / 459 |
tonsil | 0% | 0 | 0 / 0 | 11% | 0.31 | 5 / 45 |
lung | 0% | 8.95 | 1 / 578 | 10% | 0.83 | 111 / 1155 |
skin | 0% | 6.54 | 4 / 1809 | 9% | 0.81 | 44 / 472 |
esophagus | 0% | 2.27 | 1 / 1445 | 9% | 0.60 | 16 / 183 |
bladder | 0% | 0 | 0 / 21 | 7% | 0.84 | 37 / 504 |
eye | 0% | 0 | 0 / 0 | 6% | 0.65 | 5 / 80 |
stomach | 1% | 12.85 | 2 / 359 | 3% | 0.41 | 8 / 286 |
intestine | 0% | 0 | 0 / 966 | 3% | 0.27 | 17 / 527 |
blood vessel | 1% | 35.98 | 16 / 1335 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
adipose | 0% | 0 | 0 / 1204 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
peripheral blood | 0% | 0 | 0 / 929 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spleen | 0% | 0 | 0 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048169 | Biological process | regulation of long-term neuronal synaptic plasticity |
GO_0010976 | Biological process | positive regulation of neuron projection development |
GO_0051924 | Biological process | regulation of calcium ion transport |
GO_0061003 | Biological process | positive regulation of dendritic spine morphogenesis |
GO_2001222 | Biological process | regulation of neuron migration |
GO_0007165 | Biological process | signal transduction |
GO_0051823 | Biological process | regulation of synapse structural plasticity |
GO_0060998 | Biological process | regulation of dendritic spine development |
GO_0030154 | Biological process | cell differentiation |
GO_0090129 | Biological process | positive regulation of synapse maturation |
GO_0006468 | Biological process | protein phosphorylation |
GO_0014733 | Biological process | regulation of skeletal muscle adaptation |
GO_0046777 | Biological process | protein autophosphorylation |
GO_0007399 | Biological process | nervous system development |
GO_0030666 | Cellular component | endocytic vesicle membrane |
GO_0005813 | Cellular component | centrosome |
GO_0005954 | Cellular component | calcium- and calmodulin-dependent protein kinase complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0043005 | Cellular component | neuron projection |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0005737 | Cellular component | cytoplasm |
GO_0033017 | Cellular component | sarcoplasmic reticulum membrane |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0009931 | Molecular function | calcium-dependent protein serine/threonine kinase activity |
GO_0106310 | Molecular function | protein serine kinase activity |
GO_0042802 | Molecular function | identical protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0005524 | Molecular function | ATP binding |
GO_0004683 | Molecular function | calmodulin-dependent protein kinase activity |
GO_0005516 | Molecular function | calmodulin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | CAMK2B |
Protein name | calcium/calmodulin-dependent protein kinase (EC 2.7.11.17) Calcium/calmodulin dependent protein kinase II beta Calcium/calmodulin-dependent protein kinase type II subunit beta (CaM kinase II subunit beta) (CaMK-II subunit beta) (EC 2.7.11.17) Uncharacterized protein CAMK2B |
Synonyms | CAM2 CAMKB CAMK2 tcag7.799 |
Description | FUNCTION: Calcium/calmodulin-dependent protein kinase that functions autonomously after Ca(2+)/calmodulin-binding and autophosphorylation, and is involved in dendritic spine and synapse formation, neuronal plasticity and regulation of sarcoplasmic reticulum Ca(2+) transport in skeletal muscle . In neurons, plays an essential structural role in the reorganization of the actin cytoskeleton during plasticity by binding and bundling actin filaments in a kinase-independent manner. This structural function is required for correct targeting of CaMK2A, which acts downstream of NMDAR to promote dendritic spine and synapse formation and maintain synaptic plasticity which enables long-term potentiation (LTP) and hippocampus-dependent learning. In developing hippocampal neurons, promotes arborization of the dendritic tree and in mature neurons, promotes dendritic remodeling. Also regulates the migration of developing neurons . Participates in the modulation of skeletal muscle function in response to exercise . In slow-twitch muscles, is involved in regulation of sarcoplasmic reticulum (SR) Ca(2+) transport and in fast-twitch muscle participates in the control of Ca(2+) release from the SR through phosphorylation of triadin, a ryanodine receptor-coupling factor, and phospholamban (PLN/PLB), an endogenous inhibitor of SERCA2A/ATP2A2. In response to interferon-gamma (IFN-gamma) stimulation, catalyzes phosphorylation of STAT1, stimulating the JAK-STAT signaling pathway (By similarity). Phosphorylates reticulophagy regulator RETREG1 at 'Ser-151' under endoplasmic reticulum stress conditions which enhances RETREG1 oligomerization and its membrane scission and reticulophagy activity . . |
Accessions | ENST00000346990.8 [Q13554-7] ENST00000700237.1 ENST00000700240.1 E7ERS6 A0A8V8TQS2 ENST00000395749.7 [Q13554-1] A0A8V8TPX2 ENST00000700234.1 A0A8V8TQ13 ENST00000350811.7 [Q13554-2] ENST00000700283.1 ENST00000353185.7 A0A8V8TQR5 A0A8V8TQ39 A0A8V8TPG1 ENST00000700292.1 A0A8V8TQU0 ENST00000433930.2 ENST00000470984.6 ENST00000415369.5 ENST00000358707.7 [Q13554-3] A0A8V8TPJ7 ENST00000700239.1 ENST00000424197.5 H7BZC6 ENST00000523845.5 E7EQE4 ENST00000700238.1 ENST00000700233.1 A0A8V8TQ12 A0A8V8TQ05 ENST00000353625.8 [Q13554-4] ENST00000440254.6 [Q13554-2] ENST00000700236.1 ENST00000700246.1 ENST00000700287.1 A0A8V8TR22 ENST00000700291.1 H7BXS4 ENST00000700235.1 A4D2J9 ENST00000700243.1 ENST00000700288.1 A0A8V8TR26 ENST00000700285.1 [Q13554-2] Q13554 A0A8V8TPG6 A0A8V8TQU4 ENST00000347193.8 [Q13554-6] ENST00000700241.1 ENST00000497584.5 A0A8V8TQ06 E9PBE8 A0A8V8TPW6 ENST00000258682.10 [Q13554-8] ENST00000700290.1 A0A8V8TPX9 ENST00000700284.1 Q75LA8 Q75KE9 ENST00000395747.6 [Q13554-5] A0A8V8TR45 ENST00000495819.6 A0A8V8TPH1 |