Name | Number of supported studies | Average coverage | |
---|---|---|---|
retinal cone cell | 5 studies | 25% ± 4% | |
retinal rod cell | 5 studies | 28% ± 8% | |
GABAergic neuron | 5 studies | 41% ± 21% | |
glutamatergic neuron | 5 studies | 50% ± 25% | |
neuron | 4 studies | 20% ± 6% | |
interneuron | 4 studies | 37% ± 21% | |
endothelial cell | 3 studies | 24% ± 7% | |
epithelial cell | 3 studies | 19% ± 3% | |
oligodendrocyte precursor cell | 3 studies | 22% ± 5% | |
oligodendrocyte | 3 studies | 21% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 988.07 | 1445 / 1445 | 100% | 9.48 | 183 / 183 |
bladder | 100% | 975.86 | 21 / 21 | 100% | 8.21 | 502 / 504 |
lung | 99% | 789.16 | 575 / 578 | 100% | 8.06 | 1155 / 1155 |
breast | 100% | 1025.37 | 459 / 459 | 99% | 8.92 | 1111 / 1118 |
uterus | 100% | 1412.09 | 170 / 170 | 99% | 9.75 | 456 / 459 |
brain | 99% | 1227.18 | 2621 / 2642 | 100% | 11.98 | 705 / 705 |
prostate | 100% | 790.03 | 245 / 245 | 99% | 8.47 | 498 / 502 |
intestine | 100% | 953.40 | 966 / 966 | 99% | 7.59 | 522 / 527 |
thymus | 100% | 893.37 | 652 / 653 | 99% | 7.49 | 600 / 605 |
adrenal gland | 100% | 803.08 | 258 / 258 | 99% | 12.06 | 227 / 230 |
kidney | 100% | 590.35 | 89 / 89 | 99% | 9.23 | 889 / 901 |
ovary | 100% | 1490.24 | 180 / 180 | 99% | 5.44 | 424 / 430 |
skin | 100% | 1223.60 | 1807 / 1809 | 97% | 10.29 | 458 / 472 |
stomach | 97% | 631.34 | 350 / 359 | 99% | 7.37 | 284 / 286 |
pancreas | 90% | 314.27 | 296 / 328 | 98% | 7.52 | 175 / 178 |
adipose | 100% | 1047.79 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 1349.65 | 1335 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 534.37 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 9.09 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 2.66 | 1 / 1 |
muscle | 93% | 333.54 | 748 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 93% | 6.26 | 27 / 29 |
heart | 91% | 435.94 | 785 / 861 | 0% | 0 | 0 / 0 |
liver | 33% | 82.95 | 74 / 226 | 53% | 2.23 | 217 / 406 |
eye | 0% | 0 | 0 / 0 | 80% | 4.78 | 64 / 80 |
peripheral blood | 35% | 226.07 | 322 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1905515 | Biological process | non-motile cilium assembly |
GO_0060271 | Biological process | cilium assembly |
GO_0007601 | Biological process | visual perception |
GO_0007224 | Biological process | smoothened signaling pathway |
GO_0046907 | Biological process | intracellular transport |
GO_0007368 | Biological process | determination of left/right symmetry |
GO_0001947 | Biological process | heart looping |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0032436 | Biological process | positive regulation of proteasomal ubiquitin-dependent protein catabolic process |
GO_0060173 | Biological process | limb development |
GO_0032402 | Biological process | melanosome transport |
GO_0001654 | Biological process | eye development |
GO_0051877 | Biological process | pigment granule aggregation in cell center |
GO_0007420 | Biological process | brain development |
GO_0015031 | Biological process | protein transport |
GO_0008104 | Biological process | protein localization |
GO_1903929 | Biological process | primary palate development |
GO_0048546 | Biological process | digestive tract morphogenesis |
GO_0045444 | Biological process | fat cell differentiation |
GO_0034451 | Cellular component | centriolar satellite |
GO_0001750 | Cellular component | photoreceptor outer segment |
GO_0016020 | Cellular component | membrane |
GO_0034464 | Cellular component | BBSome |
GO_0005813 | Cellular component | centrosome |
GO_0043005 | Cellular component | neuron projection |
GO_0060170 | Cellular component | ciliary membrane |
GO_0005930 | Cellular component | axoneme |
GO_0005829 | Cellular component | cytosol |
GO_0036064 | Cellular component | ciliary basal body |
GO_0005634 | Cellular component | nucleus |
GO_0061629 | Molecular function | RNA polymerase II-specific DNA-binding transcription factor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | BBS7 |
Protein name | Bardet-Biedl syndrome 7 Bardet-Biedl syndrome 7 protein (BBS2-like protein 1) |
Synonyms | BBS2L1 |
Description | FUNCTION: The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. This ciliogenic function is mediated in part by the Rab8 GDP/GTP exchange factor, which localizes to the basal body and contacts the BBSome. Rab8(GTP) enters the primary cilium and promotes extension of the ciliary membrane. Firstly the BBSome associates with the ciliary membrane and binds to RAB3IP/Rabin8, the guanosyl exchange factor (GEF) for Rab8 and then the Rab8-GTP localizes to the cilium and promotes docking and fusion of carrier vesicles to the base of the ciliary membrane. The BBSome complex, together with the LTZL1, controls SMO ciliary trafficking and contributes to the sonic hedgehog (SHH) pathway regulation. Required for proper BBSome complex assembly and its ciliary localization. . |
Accessions | Q8IWZ6 H0Y973 ENST00000506636.1 [Q8IWZ6-2] ENST00000264499.9 [Q8IWZ6-1] ENST00000507814.5 |