Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 19 studies | 37% ± 16% | |
macrophage | 12 studies | 21% ± 8% | |
epithelial cell | 10 studies | 34% ± 17% | |
endothelial cell | 9 studies | 22% ± 5% | |
kidney loop of Henle epithelial cell | 6 studies | 23% ± 5% | |
neuron | 6 studies | 29% ± 13% | |
astrocyte | 6 studies | 26% ± 8% | |
fibroblast | 6 studies | 21% ± 8% | |
ionocyte | 5 studies | 34% ± 5% | |
epithelial cell of proximal tubule | 5 studies | 26% ± 6% | |
renal alpha-intercalated cell | 5 studies | 58% ± 10% | |
basal cell | 5 studies | 31% ± 12% | |
retinal cone cell | 5 studies | 31% ± 12% | |
glutamatergic neuron | 5 studies | 40% ± 18% | |
oligodendrocyte | 5 studies | 26% ± 5% | |
pancreatic A cell | 4 studies | 44% ± 14% | |
type B pancreatic cell | 4 studies | 48% ± 20% | |
classical monocyte | 4 studies | 27% ± 8% | |
conventional dendritic cell | 4 studies | 31% ± 11% | |
natural killer cell | 4 studies | 19% ± 2% | |
retinal ganglion cell | 4 studies | 68% ± 23% | |
abnormal cell | 4 studies | 23% ± 6% | |
myeloid cell | 4 studies | 31% ± 6% | |
amacrine cell | 4 studies | 37% ± 15% | |
retina horizontal cell | 4 studies | 30% ± 8% | |
retinal rod cell | 4 studies | 21% ± 2% | |
Mueller cell | 4 studies | 26% ± 7% | |
type I pneumocyte | 4 studies | 25% ± 6% | |
GABAergic neuron | 4 studies | 36% ± 13% | |
goblet cell | 4 studies | 26% ± 11% | |
interneuron | 4 studies | 35% ± 17% | |
squamous epithelial cell | 3 studies | 40% ± 24% | |
pancreatic D cell | 3 studies | 49% ± 23% | |
hematopoietic precursor cell | 3 studies | 17% ± 1% | |
non-classical monocyte | 3 studies | 31% ± 6% | |
smooth muscle cell | 3 studies | 20% ± 3% | |
pericyte | 3 studies | 19% ± 2% | |
club cell | 3 studies | 19% ± 3% | |
enterocyte | 3 studies | 18% ± 1% | |
rod bipolar cell | 3 studies | 20% ± 5% | |
adipocyte | 3 studies | 23% ± 2% | |
pancreatic ductal cell | 3 studies | 44% ± 18% | |
monocyte | 3 studies | 21% ± 3% | |
secretory cell | 3 studies | 27% ± 14% | |
plasmacytoid dendritic cell | 3 studies | 23% ± 8% | |
oligodendrocyte precursor cell | 3 studies | 23% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 5190.17 | 2642 / 2642 | 100% | 63.93 | 705 / 705 |
esophagus | 100% | 3614.44 | 1445 / 1445 | 100% | 35.71 | 183 / 183 |
uterus | 100% | 1968.09 | 170 / 170 | 100% | 53.04 | 459 / 459 |
kidney | 100% | 4488.94 | 89 / 89 | 100% | 62.15 | 900 / 901 |
skin | 100% | 2737.78 | 1805 / 1809 | 100% | 59.71 | 472 / 472 |
breast | 100% | 1861.43 | 459 / 459 | 100% | 55.24 | 1115 / 1118 |
thymus | 100% | 3573.91 | 652 / 653 | 100% | 85.09 | 604 / 605 |
prostate | 100% | 2444.91 | 244 / 245 | 100% | 55.73 | 502 / 502 |
adrenal gland | 100% | 6474.34 | 258 / 258 | 100% | 74.14 | 229 / 230 |
ovary | 100% | 1495.89 | 180 / 180 | 100% | 26.71 | 428 / 430 |
lung | 99% | 2177.02 | 574 / 578 | 100% | 42.61 | 1155 / 1155 |
bladder | 100% | 2401.57 | 21 / 21 | 99% | 41.47 | 499 / 504 |
intestine | 100% | 2525.51 | 964 / 966 | 99% | 34.29 | 521 / 527 |
stomach | 100% | 1945.12 | 359 / 359 | 99% | 30.69 | 282 / 286 |
pancreas | 93% | 1111.04 | 306 / 328 | 100% | 50.38 | 178 / 178 |
liver | 92% | 1154.67 | 207 / 226 | 99% | 28.15 | 402 / 406 |
lymph node | 0% | 0 | 0 / 0 | 100% | 44.27 | 29 / 29 |
tonsil | 0% | 0 | 0 / 0 | 100% | 46.23 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 20.46 | 1 / 1 |
muscle | 100% | 2499.39 | 802 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 1927.02 | 1200 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 2169.49 | 1327 / 1335 | 0% | 0 | 0 / 0 |
spleen | 99% | 1420.42 | 239 / 241 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 56.97 | 79 / 80 |
heart | 96% | 4204.40 | 825 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 92% | 1634.69 | 857 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0060271 | Biological process | cilium assembly |
GO_0061512 | Biological process | protein localization to cilium |
GO_0048388 | Biological process | endosomal lumen acidification |
GO_0007042 | Biological process | lysosomal lumen acidification |
GO_0051452 | Biological process | intracellular pH reduction |
GO_0097401 | Biological process | synaptic vesicle lumen acidification |
GO_0007035 | Biological process | vacuolar acidification |
GO_0061795 | Biological process | Golgi lumen acidification |
GO_0016241 | Biological process | regulation of macroautophagy |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0035579 | Cellular component | specific granule membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0005813 | Cellular component | centrosome |
GO_1902495 | Cellular component | transmembrane transporter complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0033176 | Cellular component | proton-transporting V-type ATPase complex |
GO_0000221 | Cellular component | vacuolar proton-transporting V-type ATPase, V1 domain |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0098850 | Cellular component | extrinsic component of synaptic vesicle membrane |
GO_0010008 | Cellular component | endosome membrane |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0030665 | Cellular component | clathrin-coated vesicle membrane |
GO_0046961 | Molecular function | proton-transporting ATPase activity, rotational mechanism |
GO_0005515 | Molecular function | protein binding |
Gene name | ATP6V1D |
Protein name | V-type proton ATPase subunit D (V-ATPase subunit D) (V-ATPase 28 kDa accessory protein) (Vacuolar proton pump subunit D) V-type proton ATPase subunit D (V-type proton ATPase subunit d) (Vacuolar proton pump subunit D) ATPase H+ transporting V1 subunit D |
Synonyms | VATD ATP6M |
Description | FUNCTION: Subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons . V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment (By similarity). May play a role in cilium biogenesis through regulation of the transport and the localization of proteins to the cilium . . |
Accessions | ENST00000554236.5 Q8N5Z9 ENST00000216442.12 G3V2V6 G3V5S7 H0YJH8 ENST00000555012.1 Q6PJ05 ENST00000555723.5 ENST00000554087.5 H0YJS0 G3V341 ENST00000556058.5 G3V2S6 ENST00000555431.5 H0YJ55 ENST00000555625.5 ENST00000553687.1 G3V559 ENST00000553408.5 Q9Y5K8 ENST00000555474.5 G3V3T8 |