Name | Number of supported studies | Average coverage | |
---|---|---|---|
ciliated cell | 12 studies | 30% ± 10% | |
oligodendrocyte precursor cell | 7 studies | 35% ± 18% | |
type II pneumocyte | 6 studies | 29% ± 9% | |
goblet cell | 6 studies | 36% ± 22% | |
type I pneumocyte | 6 studies | 20% ± 6% | |
respiratory goblet cell | 4 studies | 40% ± 4% | |
epithelial cell | 3 studies | 30% ± 5% | |
basal cell | 3 studies | 25% ± 6% | |
intestinal crypt stem cell | 3 studies | 18% ± 2% |
Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 3 studies | 22% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
prostate | 90% | 1998.38 | 221 / 245 | 96% | 15.43 | 481 / 502 |
lung | 96% | 1476.50 | 555 / 578 | 74% | 10.11 | 853 / 1155 |
intestine | 52% | 2233.69 | 507 / 966 | 93% | 25.90 | 489 / 527 |
breast | 46% | 334.27 | 211 / 459 | 76% | 7.95 | 850 / 1118 |
thymus | 99% | 1163.61 | 649 / 653 | 16% | 1.11 | 97 / 605 |
bladder | 43% | 464.00 | 9 / 21 | 70% | 12.32 | 353 / 504 |
esophagus | 29% | 180.88 | 413 / 1445 | 72% | 10.12 | 132 / 183 |
ureter | 0% | 0 | 0 / 0 | 100% | 13.38 | 1 / 1 |
stomach | 16% | 62.98 | 58 / 359 | 80% | 20.34 | 230 / 286 |
pancreas | 10% | 37.93 | 34 / 328 | 79% | 8.47 | 140 / 178 |
skin | 72% | 2147.59 | 1301 / 1809 | 3% | 0.20 | 15 / 472 |
uterus | 8% | 64.42 | 13 / 170 | 54% | 6.95 | 250 / 459 |
brain | 54% | 206.60 | 1428 / 2642 | 3% | 0.14 | 19 / 705 |
kidney | 44% | 154.97 | 39 / 89 | 4% | 0.33 | 40 / 901 |
peripheral blood | 37% | 244.62 | 346 / 929 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 33% | 3.01 | 15 / 45 |
spleen | 17% | 61.34 | 40 / 241 | 0% | 0 | 0 / 0 |
ovary | 1% | 1.23 | 1 / 180 | 13% | 0.67 | 54 / 430 |
liver | 0% | 0 | 0 / 226 | 5% | 0.47 | 21 / 406 |
adrenal gland | 0% | 1.03 | 1 / 258 | 2% | 0.08 | 4 / 230 |
adipose | 1% | 4.25 | 7 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 0% | 1.01 | 3 / 1335 | 0% | 0 | 0 / 0 |
muscle | 0% | 0.61 | 1 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 80 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
heart | 0% | 0 | 0 / 861 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 29 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006828 | Biological process | manganese ion transport |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0006874 | Biological process | intracellular calcium ion homeostasis |
GO_0071421 | Biological process | manganese ion transmembrane transport |
GO_0090280 | Biological process | positive regulation of calcium ion import |
GO_0061180 | Biological process | mammary gland epithelium development |
GO_0070588 | Biological process | calcium ion transmembrane transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0031410 | Cellular component | cytoplasmic vesicle |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0009898 | Cellular component | cytoplasmic side of plasma membrane |
GO_0032588 | Cellular component | trans-Golgi network membrane |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016323 | Cellular component | basolateral plasma membrane |
GO_0140613 | Molecular function | P-type manganese transporter activity |
GO_0005388 | Molecular function | P-type calcium transporter activity |
GO_0046872 | Molecular function | metal ion binding |
GO_0005524 | Molecular function | ATP binding |
GO_0005515 | Molecular function | protein binding |
GO_0016887 | Molecular function | ATP hydrolysis activity |
Gene name | ATP2C2 |
Protein name | ATPase secretory pathway Ca2+ transporting 2 Calcium-transporting ATPase type 2C member 2 (ATPase 2C2) (EC 7.2.2.10) (Ca(2+)/Mn(2+)-ATPase 2C2) (Secretory pathway Ca(2+)-transporting ATPase type 2) (SPCA2) |
Synonyms | SPCA2 KIAA0703 |
Description | FUNCTION: ATP-driven pump that supplies the Golgi apparatus with Ca(2+) and Mn(2+) ions, both essential cofactors for processing and trafficking of newly synthesized proteins in the secretory pathway . Within a catalytic cycle, acquires Ca(2+) or Mn(2+) ions on the cytoplasmic side of the membrane and delivers them to the lumenal side. The transfer of ions across the membrane is coupled to ATP hydrolysis and is associated with a transient phosphorylation that shifts the pump conformation from inward-facing to outward-facing state . Induces Ca(2+) influx independently of its ATP-driven pump function. At the basolateral membrane of mammary epithelial cells, interacts with Ca(2+) channel ORAI1 and mediates Ca(2+) entry independently of the Ca(2+) content of endoplasmic reticulum or Golgi stores. May facilitate transepithelial transport of large quantities of Ca(2+) for milk secretion via activation of Ca(2+) influx channels at the plasma membrane and active Ca(2+) transport at the Golgi apparatus . . |
Accessions | ENST00000569207.5 O75185 H3BS90 ENST00000262429.9 [O75185-1] ENST00000416219.6 [O75185-3] |