Name | Number of supported studies | Average coverage | |
---|---|---|---|
endothelial cell | 14 studies | 27% ± 13% | |
astrocyte | 11 studies | 29% ± 11% | |
fibroblast | 7 studies | 20% ± 6% | |
pericyte | 6 studies | 18% ± 2% | |
endothelial cell of artery | 6 studies | 20% ± 4% | |
vein endothelial cell | 6 studies | 17% ± 3% | |
abnormal cell | 4 studies | 28% ± 16% | |
glutamatergic neuron | 4 studies | 34% ± 11% | |
interneuron | 4 studies | 32% ± 12% | |
oligodendrocyte precursor cell | 4 studies | 24% ± 7% | |
epithelial cell | 4 studies | 34% ± 17% | |
type I pneumocyte | 4 studies | 20% ± 4% | |
ciliated cell | 4 studies | 27% ± 8% | |
endothelial cell of vascular tree | 4 studies | 21% ± 4% | |
neuron | 3 studies | 29% ± 6% | |
granule cell | 3 studies | 19% ± 2% | |
retinal bipolar neuron | 3 studies | 23% ± 3% | |
muscle cell | 3 studies | 18% ± 3% | |
GABAergic neuron | 3 studies | 32% ± 12% | |
myofibroblast cell | 3 studies | 22% ± 4% | |
adipocyte | 3 studies | 22% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 30276.78 | 258 / 258 | 100% | 166.53 | 230 / 230 |
ovary | 100% | 47967.61 | 180 / 180 | 100% | 332.07 | 430 / 430 |
esophagus | 100% | 23434.94 | 1444 / 1445 | 100% | 175.81 | 183 / 183 |
prostate | 100% | 26878.85 | 245 / 245 | 100% | 148.55 | 500 / 502 |
skin | 100% | 15966.00 | 1809 / 1809 | 99% | 156.98 | 469 / 472 |
thymus | 100% | 43859.34 | 653 / 653 | 99% | 161.13 | 601 / 605 |
brain | 100% | 23057.79 | 2635 / 2642 | 100% | 295.26 | 702 / 705 |
breast | 100% | 27534.85 | 459 / 459 | 99% | 161.07 | 1105 / 1118 |
intestine | 100% | 25319.99 | 966 / 966 | 98% | 102.35 | 519 / 527 |
uterus | 100% | 36504.82 | 170 / 170 | 98% | 144.35 | 451 / 459 |
kidney | 100% | 18549.13 | 89 / 89 | 98% | 121.23 | 883 / 901 |
stomach | 100% | 17898.45 | 359 / 359 | 98% | 109.34 | 279 / 286 |
lung | 100% | 23619.60 | 577 / 578 | 97% | 134.02 | 1124 / 1155 |
bladder | 100% | 26019.62 | 21 / 21 | 97% | 122.20 | 488 / 504 |
pancreas | 98% | 9610.47 | 321 / 328 | 98% | 123.77 | 175 / 178 |
liver | 63% | 3687.19 | 143 / 226 | 55% | 35.85 | 222 / 406 |
adipose | 100% | 25916.01 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 159.49 | 80 / 80 |
spleen | 100% | 15941.08 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 115.18 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 85.45 | 1 / 1 |
blood vessel | 100% | 25296.82 | 1334 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 12677.16 | 850 / 861 | 0% | 0 | 0 / 0 |
muscle | 98% | 10020.25 | 788 / 803 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 69% | 35.39 | 20 / 29 |
peripheral blood | 23% | 1656.42 | 216 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001906 | Biological process | cell killing |
GO_0030011 | Biological process | maintenance of cell polarity |
GO_0007283 | Biological process | spermatogenesis |
GO_0009791 | Biological process | post-embryonic development |
GO_0008340 | Biological process | determination of adult lifespan |
GO_0035264 | Biological process | multicellular organism growth |
GO_0000122 | Biological process | negative regulation of transcription by RNA polymerase II |
GO_0051402 | Biological process | neuron apoptotic process |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0007417 | Biological process | central nervous system development |
GO_0008584 | Biological process | male gonad development |
GO_0032094 | Biological process | response to food |
GO_0016477 | Biological process | cell migration |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0005654 | Cellular component | nucleoplasm |
GO_0016363 | Cellular component | nuclear matrix |
GO_0070161 | Cellular component | anchoring junction |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0003714 | Molecular function | transcription corepressor activity |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ATN1 |
Protein name | Atrophin 1 Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein) |
Synonyms | D12S755E DRPLA |
Description | FUNCTION: Transcriptional corepressor. Recruits NR2E1 to repress transcription. Promotes vascular smooth cell (VSMC) migration and orientation (By similarity). Corepressor of MTG8 transcriptional repression. Has some intrinsic repression activity which is independent of the number of poly-Gln (polyQ) repeats. . |
Accessions | Q86V38 ENST00000396684.3 P54259 ENST00000356654.8 |