ATG4B report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

GO_0051697Biological processprotein delipidation
GO_0000045Biological processautophagosome assembly
GO_0034497Biological processprotein localization to phagophore assembly site
GO_0034727Biological processpiecemeal microautophagy of the nucleus
GO_0031173Biological processotolith mineralization completed early in development
GO_0016236Biological processmacroautophagy
GO_0016485Biological processprotein processing
GO_0035973Biological processaggrephagy
GO_0006501Biological processC-terminal protein lipidation
GO_0006508Biological processproteolysis
GO_0016237Biological processmicroautophagy
GO_0015031Biological processprotein transport
GO_0000423Biological processmitophagy
GO_0006914Biological processautophagy
GO_0031410Cellular componentcytoplasmic vesicle
GO_0005739Cellular componentmitochondrion
GO_0000421Cellular componentautophagosome membrane
GO_0005783Cellular componentendoplasmic reticulum
GO_0005829Cellular componentcytosol
GO_0005737Cellular componentcytoplasm
GO_0004175Molecular functionendopeptidase activity
GO_0019786Molecular functionprotein-phosphatidylethanolamide deconjugating activity
GO_0097110Molecular functionscaffold protein binding
GO_0008234Molecular functioncysteine-type peptidase activity
GO_0004197Molecular functioncysteine-type endopeptidase activity
GO_0005515Molecular functionprotein binding

IV. Literature review

[source]
Gene nameATG4B
Protein nameCysteine protease (EC 3.4.22.-)
Cysteine protease ATG4B (Autophagy-related protein 4 homolog B)
Cysteine protease ATG4B (EC 3.4.22.-) (AUT-like 1 cysteine endopeptidase) (Autophagy-related cysteine endopeptidase 1) (Autophagin-1) (Autophagy-related protein 4 homolog B) (HsAPG4B) (hAPG4B)
SynonymsAUTL1
APG4B
KIAA0943
DescriptionFUNCTION: Cysteine protease that plays a key role in autophagy by mediating both proteolytic activation and delipidation of ATG8 family proteins . Required for canonical autophagy (macroautophagy), non-canonical autophagy as well as for mitophagy . The protease activity is required for proteolytic activation of ATG8 family proteins: cleaves the C-terminal amino acid of ATG8 proteins MAP1LC3A, MAP1LC3B, MAP1LC3C, GABARAPL1, GABARAPL2 and GABARAP, to reveal a C-terminal glycine . Exposure of the glycine at the C-terminus is essential for ATG8 proteins conjugation to phosphatidylethanolamine (PE) and insertion to membranes, which is necessary for autophagy . Protease activity is also required to counteract formation of high-molecular weight conjugates of ATG8 proteins (ATG8ylation): acts as a deubiquitinating-like enzyme that removes ATG8 conjugated to other proteins, such as ATG3 . In addition to the protease activity, also mediates delipidation of ATG8 family proteins . Catalyzes delipidation of PE-conjugated forms of ATG8 proteins during macroautophagy . Also involved in non-canonical autophagy, a parallel pathway involving conjugation of ATG8 proteins to single membranes at endolysosomal compartments, by catalyzing delipidation of ATG8 proteins conjugated to phosphatidylserine (PS) . Compared to other members of the family (ATG4A, ATG4C or ATG4C), constitutes the major protein for proteolytic activation of ATG8 proteins, while it displays weaker delipidation activity than other ATG4 paralogs . Involved in phagophore growth during mitophagy independently of its protease activity and of ATG8 proteins: acts by regulating ATG9A trafficking to mitochondria and promoting phagophore-endoplasmic reticulum contacts during the lipid transfer phase of mitophagy . .

FUNCTION: Cysteine protease that plays a key role in autophagy by mediating both proteolytic activation and delipidation of ATG8 family proteins. .

FUNCTION: Cysteine protease that plays a key role in autophagy by mediating both proteolytic activation and delipidation of ATG8 family proteins. .

AccessionsC9J1C1
ENST00000400771.7
ENST00000344376.9
ENST00000404914.8 [Q9Y4P1-1]
Q9Y4P1
F2Z2K8
C9JIK8
ENST00000402096.5 [Q9Y4P1-4]
ENST00000419606.5
ENST00000400772.6
ENST00000405546.7 [Q9Y4P1-6]
ENST00000625810.2
H0Y2Y0
ENST00000415107.5