Name | Number of supported studies | Average coverage | |
|---|---|---|---|
| endothelial cell | 17 studies | 26% ± 12% | |
| microglial cell | 11 studies | 31% ± 12% | |
| astrocyte | 10 studies | 37% ± 17% | |
| oligodendrocyte | 9 studies | 30% ± 12% | |
| GABAergic neuron | 8 studies | 35% ± 21% | |
| glutamatergic neuron | 8 studies | 39% ± 26% | |
| adipocyte | 8 studies | 28% ± 6% | |
| oligodendrocyte precursor cell | 8 studies | 29% ± 11% | |
| macrophage | 7 studies | 27% ± 10% | |
| fibroblast | 6 studies | 24% ± 5% | |
| interneuron | 5 studies | 43% ± 20% | |
| epithelial cell | 5 studies | 30% ± 14% | |
| endothelial cell of lymphatic vessel | 5 studies | 24% ± 3% | |
| neuron | 4 studies | 27% ± 11% | |
| cardiac muscle cell | 4 studies | 21% ± 1% | |
| dendritic cell | 4 studies | 18% ± 3% | |
| monocyte | 4 studies | 20% ± 2% | |
| type I pneumocyte | 4 studies | 24% ± 6% | |
| type II pneumocyte | 4 studies | 19% ± 4% | |
| granule cell | 3 studies | 23% ± 5% | |
| glycinergic amacrine cell | 3 studies | 16% ± 1% | |
| hepatocyte | 3 studies | 27% ± 8% | |
| retinal pigment epithelial cell | 3 studies | 28% ± 17% | |
| ependymal cell | 3 studies | 32% ± 14% | |
| myeloid cell | 3 studies | 20% ± 2% | |
| smooth muscle cell | 3 studies | 16% ± 1% | |
| mast cell | 3 studies | 17% ± 1% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
|---|---|---|---|---|---|---|
| breast | 100% | 440.19 | 459 / 459 | 100% | 5.13 | 1118 / 1118 |
| prostate | 100% | 379.87 | 245 / 245 | 100% | 5.47 | 502 / 502 |
| thymus | 100% | 421.99 | 653 / 653 | 100% | 6.39 | 605 / 605 |
| uterus | 100% | 348.86 | 170 / 170 | 100% | 5.55 | 459 / 459 |
| intestine | 100% | 361.07 | 966 / 966 | 100% | 4.00 | 526 / 527 |
| bladder | 100% | 377.81 | 21 / 21 | 100% | 4.55 | 503 / 504 |
| kidney | 100% | 328.17 | 89 / 89 | 100% | 5.01 | 899 / 901 |
| pancreas | 100% | 233.26 | 327 / 328 | 100% | 3.86 | 178 / 178 |
| brain | 100% | 281.72 | 2633 / 2642 | 100% | 4.10 | 705 / 705 |
| lung | 100% | 352.51 | 577 / 578 | 100% | 4.70 | 1152 / 1155 |
| adrenal gland | 100% | 364.62 | 258 / 258 | 100% | 5.57 | 229 / 230 |
| liver | 100% | 229.04 | 226 / 226 | 100% | 3.70 | 404 / 406 |
| esophagus | 100% | 368.11 | 1445 / 1445 | 99% | 3.28 | 182 / 183 |
| ovary | 99% | 265.96 | 179 / 180 | 100% | 3.48 | 429 / 430 |
| stomach | 100% | 246.04 | 359 / 359 | 99% | 3.44 | 283 / 286 |
| skin | 100% | 490.79 | 1809 / 1809 | 98% | 4.66 | 463 / 472 |
| adipose | 100% | 376.12 | 1204 / 1204 | 0% | 0 | 0 / 0 |
| blood vessel | 100% | 384.19 | 1335 / 1335 | 0% | 0 | 0 / 0 |
| lymph node | 0% | 0 | 0 / 0 | 100% | 4.03 | 29 / 29 |
| spleen | 100% | 300.24 | 241 / 241 | 0% | 0 | 0 / 0 |
| tonsil | 0% | 0 | 0 / 0 | 100% | 5.75 | 45 / 45 |
| ureter | 0% | 0 | 0 / 0 | 100% | 1.15 | 1 / 1 |
| muscle | 99% | 281.84 | 797 / 803 | 0% | 0 | 0 / 0 |
| eye | 0% | 0 | 0 / 0 | 98% | 4.36 | 78 / 80 |
| heart | 97% | 237.21 | 834 / 861 | 0% | 0 | 0 / 0 |
| peripheral blood | 77% | 157.17 | 719 / 929 | 0% | 0 | 0 / 0 |
| abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
| GO_0000422 | Biological process | autophagy of mitochondrion |
| GO_0015031 | Biological process | protein transport |
| GO_0006914 | Biological process | autophagy |
| GO_0006983 | Biological process | ER overload response |
| GO_0032446 | Biological process | protein modification by small protein conjugation |
| GO_0031401 | Biological process | positive regulation of protein modification process |
| GO_0000045 | Biological process | autophagosome assembly |
| GO_0006497 | Biological process | protein lipidation |
| GO_0005829 | Cellular component | cytosol |
| GO_0019777 | Molecular function | Atg12 transferase activity |
| GO_0005515 | Molecular function | protein binding |
| GO_0061651 | Molecular function | Atg12 conjugating enzyme activity |
| Gene name | ATG10 |
| Protein name | Autophagy related 10 Ubiquitin-like-conjugating enzyme ATG10 (EC 2.3.2.-) (Autophagy-related protein 10) (APG10-like) Ubiquitin-like-conjugating enzyme ATG10 (Autophagy-related protein 10) |
| Synonyms | PP12616 APG10L |
| Description | FUNCTION: E2-like enzyme involved in autophagy. Acts as an E2-like enzyme that catalyzes the conjugation of ATG12 to ATG5. ATG12 conjugation to ATG5 is required for autophagy. Likely serves as an ATG5-recognition molecule. Not involved in ATG12 conjugation to ATG3 (By similarity). Plays a role in adenovirus-mediated cell lysis. . |
| Accessions | ENST00000504770.5 D6RBD1 ENST00000355178.8 [Q9H0Y0-2] D6RC89 ENST00000513634.1 ENST00000513443.5 [Q9H0Y0-2] Q9H0Y0 ENST00000510085.1 ENST00000282185.8 [Q9H0Y0-1] ENST00000458350.7 [Q9H0Y0-1] D6RDX3 |