Name | Number of supported studies | Average coverage | |
---|---|---|---|
astrocyte | 16 studies | 59% ± 20% | |
oligodendrocyte | 15 studies | 50% ± 18% | |
oligodendrocyte precursor cell | 15 studies | 72% ± 22% | |
glutamatergic neuron | 13 studies | 55% ± 22% | |
GABAergic neuron | 10 studies | 65% ± 22% | |
neuron | 6 studies | 38% ± 16% | |
retinal ganglion cell | 6 studies | 67% ± 33% | |
ciliated cell | 5 studies | 31% ± 12% | |
interneuron | 5 studies | 63% ± 26% | |
endothelial cell | 4 studies | 45% ± 14% | |
granule cell | 4 studies | 50% ± 27% | |
macrophage | 4 studies | 31% ± 10% | |
microglial cell | 4 studies | 42% ± 20% | |
retina horizontal cell | 4 studies | 31% ± 14% | |
retinal cone cell | 4 studies | 50% ± 25% | |
GABAergic interneuron | 3 studies | 75% ± 3% | |
fibroblast | 3 studies | 24% ± 6% | |
GABAergic amacrine cell | 3 studies | 36% ± 10% | |
glycinergic amacrine cell | 3 studies | 30% ± 11% | |
retinal rod cell | 3 studies | 21% ± 3% | |
amacrine cell | 3 studies | 24% ± 11% | |
ependymal cell | 3 studies | 57% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
brain | 100% | 1925.75 | 2639 / 2642 | 99% | 45.96 | 701 / 705 |
prostate | 100% | 2716.25 | 244 / 245 | 99% | 55.44 | 497 / 502 |
kidney | 99% | 634.04 | 88 / 89 | 62% | 7.53 | 560 / 901 |
adrenal gland | 86% | 439.20 | 222 / 258 | 70% | 29.30 | 160 / 230 |
breast | 63% | 320.93 | 287 / 459 | 67% | 10.40 | 754 / 1118 |
uterus | 80% | 377.58 | 136 / 170 | 21% | 1.98 | 96 / 459 |
pancreas | 92% | 399.44 | 302 / 328 | 8% | 1.87 | 15 / 178 |
stomach | 96% | 565.27 | 346 / 359 | 3% | 0.36 | 10 / 286 |
bladder | 76% | 391.95 | 16 / 21 | 19% | 2.01 | 96 / 504 |
eye | 0% | 0 | 0 / 0 | 89% | 26.89 | 71 / 80 |
blood vessel | 84% | 531.56 | 1124 / 1335 | 0% | 0 | 0 / 0 |
esophagus | 63% | 418.75 | 904 / 1445 | 20% | 1.78 | 37 / 183 |
intestine | 76% | 497.26 | 738 / 966 | 3% | 0.32 | 16 / 527 |
skin | 45% | 158.06 | 812 / 1809 | 31% | 5.08 | 148 / 472 |
heart | 76% | 1281.36 | 656 / 861 | 0% | 0 | 0 / 0 |
ovary | 63% | 273.87 | 114 / 180 | 7% | 0.48 | 30 / 430 |
thymus | 48% | 147.06 | 311 / 653 | 18% | 3.94 | 106 / 605 |
tonsil | 0% | 0 | 0 / 0 | 64% | 8.39 | 29 / 45 |
muscle | 55% | 235.30 | 440 / 803 | 0% | 0 | 0 / 0 |
adipose | 42% | 138.22 | 500 / 1204 | 0% | 0 | 0 / 0 |
lung | 27% | 97.40 | 157 / 578 | 14% | 1.64 | 159 / 1155 |
spleen | 30% | 94.51 | 72 / 241 | 0% | 0 | 0 / 0 |
liver | 19% | 52.23 | 43 / 226 | 3% | 0.29 | 14 / 406 |
peripheral blood | 17% | 77.33 | 157 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 10% | 0.67 | 3 / 29 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0048105 | Biological process | establishment of body hair planar orientation |
GO_0015031 | Biological process | protein transport |
GO_0001764 | Biological process | neuron migration |
GO_0007158 | Biological process | neuron cell-cell adhesion |
GO_0034394 | Biological process | protein localization to cell surface |
GO_2000009 | Biological process | negative regulation of protein localization to cell surface |
GO_0043204 | Cellular component | perikaryon |
GO_0005768 | Cellular component | endosome |
GO_0005938 | Cellular component | cell cortex |
GO_0005770 | Cellular component | late endosome |
GO_0030136 | Cellular component | clathrin-coated vesicle |
GO_0060187 | Cellular component | cell pole |
GO_0016020 | Cellular component | membrane |
GO_0005769 | Cellular component | early endosome |
GO_0043533 | Molecular function | inositol 1,3,4,5 tetrakisphosphate binding |
GO_0005509 | Molecular function | calcium ion binding |
Gene name | ASTN2 |
Protein name | Astrotactin-2 Astrotactin 2 ASTN2 protein |
Synonyms | KIAA0634 hCG_2036769 |
Description | FUNCTION: Mediates recycling of the neuronal cell adhesion molecule ASTN1 to the anterior pole of the cell membrane in migrating neurons. Promotes ASTN1 internalization and intracellular transport of endocytosed ASTN1 (By similarity). Selectively binds inositol-4,5-bisphosphate, inositol-3,4,5-trisphosphate and inositol-1,3,4,5-tetrakisphosphate, suggesting it is recruited to membranes that contain lipids with a phosphoinositide headgroup (Ref.6). . |
Accessions | ENST00000288520.9 [O75129-4] B7ZKP5 ENST00000361209.6 [O75129-2] O75129 H7C3I6 ENST00000361477.8 ENST00000373986.7 A0A0A0MRH9 ENST00000313400.9 [O75129-1] B7ZKP3 B2RCB6 B7ZKP4 H0Y3A8 X6R5P2 ENST00000358637.4 ENST00000341734.8 [O75129-6] ENST00000417725.1 |